Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0956 ATGGAGGGCAAAGAAGAGGATGTGAGAGTTGGAGCCAACAGGTACGGAGAGAGGCAGCCAATAGGAACCGCTGCTCAGGCCAAAGACTACAGAGAGCCACCCTCTGCACCTCTCTTTGAGGCCGGGGAGTTGTCATCCTGGTCTTTCTATAGGGCTGGCATAGCAGAGTTTGTGGCCACTTTCTTGTTCCTCTACATCACGGTCCTCACTGTGATGGGTGTGGCCAAATCCAAGAGCAAGTGTTCTACCGTGGGCATCCAAGGCATTGCTTGGGCTTTTGGGGGAATGATATTTGCTCTTGTTTATTGCACTGCTGGCATCTCGGGGGGTCATATTAACCCAGCAGTGACGTTTGGGCTGTTCTTGGCACGCAAGCTCTCTATGACAAGGGCAATTTTTTATATAATCATGCAGTGCTTGGGAGCTATATGTGGTGCCGGTGTAGTTAAGGGGTTCGAGCCTCACCTCTATGAGAGGCTTGGTGGTGGTGCCAACACAATCGCTAAAGGGTACACCAATATTGCTGGCCTTGGAGCAGAGATTGTTGGCACATTTGTGCTTGTTTACACTGTCTTCTCTGCCACTGATGCCAAAAGAAATGCTAGAGACTCCCACGTTCCGATTTTGGCACCACTGCCTATTGGTTTTGCTGTGTTTCTAGTGCACTTGGCTACAATTCCTGTTACAGGGACTGGTATCAACCCTGCTAGAAGTCTAGGTGCAGCCATTATCTTCAACAAAGACCAAGCTTGGGATGACCATTGGATTTTTTGGGTTGGAACTTTCATTGGGGCGGCACTTGCAGCTTTATACCATGGGACAACTCCCTTATACCATCAGGTAGTGATCAGGGCCATCCCCTTCTCGTCAAAGTGA 876 0.4954 MEGKEEDVRVGANRYGERQPIGTAAQAKDYREPPSAPLFEAGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSMTRAIFYIIMQCLGAICGAGVVKGFEPHLYERLGGGANTIAKGYTNIAGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPVTGTGINPARSLGAAIIFNKDQAWDDHWIFWVGTFIGAALAALYHGTTPLYHQVVIRAIPFSSK* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0956 291 TIGRFAM MIP: MIP family channel proteins 55 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g0956 291 SUPERFAMILY Aquaporin-like 44 275 IPR023271 -
Gso1g0956 291 Gene3D Glycerol uptake facilitator protein. 36 277 IPR023271 -
Gso1g0956 291 PANTHER AQUAPORIN PIP1-2 1 291 - -
Gso1g0956 291 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Gso1g0956 291 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g0956 291 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g0956 291 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g0956 291 PRINTS Major intrinsic protein family signature 179 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g0956 291 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g0956 291 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g0956 291 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 291 IPR034294 -
Gso1g0956 291 CDD MIP 51 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g0956 291 Pfam Major intrinsic protein 43 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0956 Gso-Chr1 38713758 38728565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0956 1 291 Major Intrinsic Protein MIP AT3G61430 82.877 8.28e-173 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0956 K09872 - gmx:100803259 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0956 1 38713758 38728565 Gso3g0694 3 21144137 21147489 GST