Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0955 ATGTCTAATTTGACTTCTACATTTGCTGAAGCTAGGGCTTCCTCAGACAACAGAACCGAAATTGGCACTGATTACTCACAGCAATACTTTACTCCACCACAAACTCAAACACAACCTCCACTAAAGAAAAAGAGAAACCTTTCTGCCAACCCAGACCCTAAAGCTGAAGTTGTCAGCTTGTCTCCAAAGACTCTCTTGGCAAGTAATAGGTTCATTTGTGAGATTTGCAACAAAGGATTTCAAAGAGACCAGAATCTCCAACTTCACAGAAGAGGACACAATTTACCATGGAAGCTGAACCAAAGATCAAGCAAAGAGATTATAAGGAAGAAGGTGTATGTGTGCCCAGAAGCTAGTTGCATGCACCATGAGCCTTCAAGGGCCCTAGGGGACCTCACTGGCATCAAGAAGCACTTATGCAGAAAGCATGGCCAGAAGAAGTGGAAATATGACAAATGA 459 0.4292 MSNLTSTFAEARASSDNRTEIGTDYSQQYFTPPQTQTQPPLKKKRNLSANPDPKAEVVSLSPKTLLASNRFICEICNKGFQRDQNLQLHRRGHNLPWKLNQRSSKEIIRKKVYVCPEASCMHHEPSRALGDLTGIKKHLCRKHGQKKWKYDK* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0955 152 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Gso1g0955 152 SMART c2h2final6 113 143 IPR013087 -
Gso1g0955 152 SMART c2h2final6 71 93 IPR013087 -
Gso1g0955 152 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Gso1g0955 152 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 152 - -
Gso1g0955 152 MobiDBLite consensus disorder prediction 1 44 - -
Gso1g0955 152 MobiDBLite consensus disorder prediction 1 55 - -
Gso1g0955 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Gso1g0955 152 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 152 - -
Gso1g0955 152 Gene3D Classic Zinc Finger 46 125 - -
Gso1g0955 152 SUPERFAMILY beta-beta-alpha zinc fingers 69 94 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0955 Gso-Chr1 38667865 38668501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0955 1 152 IDZ Gene Family AT3G13810 67.073 6.67e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso1g0955 zf-C2H2_jaz 1.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0955 K25870 - gmx:102668301 299.286