Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0949 ATGCCTTCTTCTTCCACCACCATAGTCTCCAAATGCGTGATCCACCCCGACCAGAAATCAAACATGAAACCCTTGAGACTCTCTGTTTCTGACCTTCCAATGTTGTCGTGTCACTACATCCAAAAGGGCGTGTTACTAACCGCTCCGCCCTCGTCTTTCGAGGATATGATACTCTCTTTTAAACACTCTCTTTCTATCGCGCTCTCTCACTTTCCGGCTCTTGCGGGAAGGTTAGAGACAGATTCTCATGGTTATGTTAATATTGTCTGTAACGACGCTGGCGTGGATTTTATCCATGCTAAAGCAAAACACCTGACTCTGAACGCCGTCGTTTCACCGTCTCTCGTTGATGTTCACCCTTGCTTCAAGGAGGAGTTTTTCGCTTACGACATGACAATCTCCTACGCCGGCCACAACACCCCCCTCGCCGCCGTCCAGGTGACGGAACTCGCCGACGGCGTCTTCGTCGGCTGCACCGTCAACCACTCCGTCACCGACGGCACCTCGTTCTGGCACTTCTTCAACACGTTCGCCGCCGTCACCAAAGGCGGGTCCGCCAAGAAACTCCTCCGCGCGCCGGACTTCACGAGGGAAACCGTCTTCAACTCCGCCGCCGTCCTCCCCGTCCCCTCCGGCGGCCCCACCGTCACCTTCGACGCCAACGAGCCTCTCCGGGAACGCGTCTTCCACTTCTCCCGCGAAGCCATTCAGAAACTCAAACAACGAGCCAACAACACTGTCAACAACAAGGAACTAACGGAAGTTATGGGAAAACATGTAAATGACGGTTGGAAAGTCGTTAACGGTAACGGTAACTGTAACGGAATGATTAACGGTAACGGAAGAAACGAGATCTCGTCGTTTCAGTCGTTATCTGCTCAGCTCTGGAGAGCGGTGACACGTGCGAGGAAATTCAACGACCCGGCCAAAACGTCGACGTTTCGGATGGCGGTGAATTGCCGCCACCGTCTGGAGCCGAAGATGGACGCGTTCTACTTCGGCAATGCGATTCAGAGCATCCCGACGGTCGCGACCGTCGGAGACATTCTCTCGCGCGATCTGCGCTTCTGCGCAGATCTTCTGCACCGTAACGTCGTCGCTCATGATGACGCTACGGTGCGCCGCGGAATTGAGGACTGGGAGAGTGCGCCAAGGCTGTTTCCTCTCGGAAACTTTGACGGCGCGATGATCACCATGGGAAGCTCTCCGCGGTTTCCCATGTACGAAAACGACTTCGGCTGGGGCAGACCCGTTGCGATTCGGAGTGGGAAAGCGAACAAGTTCGACGGAAAGATCTCCGCGTTTCCGGGGAGAGAGGGAAACGGCAGCGTCGATTTGGAGGTCGTTTTGGCCCCGGCGACCATGGCGGGGCTCGAAAACGACATGGAGTTTATGCAATACGTAACGCAATTCGTTTGA 1419 0.5497 MPSSSTTIVSKCVIHPDQKSNMKPLRLSVSDLPMLSCHYIQKGVLLTAPPSSFEDMILSFKHSLSIALSHFPALAGRLETDSHGYVNIVCNDAGVDFIHAKAKHLTLNAVVSPSLVDVHPCFKEEFFAYDMTISYAGHNTPLAAVQVTELADGVFVGCTVNHSVTDGTSFWHFFNTFAAVTKGGSAKKLLRAPDFTRETVFNSAAVLPVPSGGPTVTFDANEPLRERVFHFSREAIQKLKQRANNTVNNKELTEVMGKHVNDGWKVVNGNGNCNGMINGNGRNEISSFQSLSAQLWRAVTRARKFNDPAKTSTFRMAVNCRHRLEPKMDAFYFGNAIQSIPTVATVGDILSRDLRFCADLLHRNVVAHDDATVRRGIEDWESAPRLFPLGNFDGAMITMGSSPRFPMYENDFGWGRPVAIRSGKANKFDGKISAFPGREGNGSVDLEVVLAPATMAGLENDMEFMQYVTQFV* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0949 472 PANTHER ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 5 469 - -
Gso1g0949 472 SUPERFAMILY CoA-dependent acyltransferases 60 183 - -
Gso1g0949 472 Gene3D - 6 208 IPR023213 -
Gso1g0949 472 Pfam Transferase family 6 465 - -
Gso1g0949 472 Gene3D - 222 465 IPR023213 -
Gso1g0949 472 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 5 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0949 Gso-Chr1 38487395 38489403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0949 61 460 Monolignol Biosynthesis Gene Families AT5G48930 26.585 4.66e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0949 - - gmx:100780358 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0949 1 38487395 38489403 Gso3g0687 3 21019993 21022044 GST