LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso1g0946	ATGCTTCTTGATTATATTCTTCTTAGCAGCTCCACTAGTCCACCACTCTTCACATCTTCTCTCACTTTGAATTCAAAGAGAGAAACAATGAACAGGGGAATTGAAGTTCTTTCTCCAGCCTCATACCTCCAGAGTTCCAATTGGTTGTTCCAAGAAAGCTCGGGGACCAGGTGGACTCCACAGGAGAACAAGCTCTTTGAGAATGCTTTGGCTGTGTTTGACAAGGACACGCCGGACCGGTGGCTGAAGGTGGCCGCCTTGATTCCGGGCAAGACGGTCGGTGATGTGATCAAACAGTACAGGGAACTTGAAGCAGATGTGAGTGTCATTGAATCTGGGTTTATCCCAGTTCCAGGGTACACTGCTACTGATTCCTTCACATTGGAGTGGGTCAATAATCAAGGATTTGGTGGGCTCAGGCAGTTTTATGGTGTTACTGGCAAAAGGGGTGCTTCCAATAGACCATCTGAGCAGGAGAGGAAGAAAGGAGTGCCATGGACTAAAGAGGAGCACAGACAATTTCTGACGGGTCTGAAGAAGTATGGTAAAGGAGACTGGAGAAACATTTCTCGCAATTTTGTGATCACAAGGACTCCAACTCAGGTTGCAAGTCATGCTCAGAAGTATTTCATCAGGCAACTAAGTGGGGGAAAGGATAAGAAGAGATCCAGTATCCATGACATCACAATGGTGAATCTCCCAGAAGCAAAATCTCTTTCATCTGAGAGTAACAGACCCTCTTCACTAGATCACTCAGTGAAGGATGTGAATCCACCACGCCAGAATCAGAAATTGTCTACTACCATGGTAATTAAACAGGAACATGATTGGAAATTGCCATGTGAAACTGTGCCTATGCATTTCAATTCCACAAATAGAAACATGTTCATGACACAACTTTGTGGGATTTCTTCAAATGGGTCTAAACCACTTCAGGAGCAGTATTTCCTCAGTGGATGCCAATTTGGACCTTATGGTACAATTATTCAAATGCAGTCCATGCAAAATCAATGA	1014	0.4428	MLLDYILLSSSTSPPLFTSSLTLNSKRETMNRGIEVLSPASYLQSSNWLFQESSGTRWTPQENKLFENALAVFDKDTPDRWLKVAALIPGKTVGDVIKQYRELEADVSVIESGFIPVPGYTATDSFTLEWVNNQGFGGLRQFYGVTGKRGASNRPSEQERKKGVPWTKEEHRQFLTGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKKRSSIHDITMVNLPEAKSLSSESNRPSSLDHSVKDVNPPRQNQKLSTTMVIKQEHDWKLPCETVPMHFNSTNRNMFMTQLCGISSNGSKPLQEQYFLSGCQFGPYGTIIQMQSMQNQ*	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso1g0946	337	MobiDBLite	consensus disorder prediction	147	167	-	-
	Gso1g0946	337	MobiDBLite	consensus disorder prediction	153	167	-	-
	Gso1g0946	337	CDD	SANT	57	103	IPR001005	-
	Gso1g0946	337	CDD	SANT	165	210	IPR001005	-
	Gso1g0946	337	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	158	214	IPR017930	-
	Gso1g0946	337	SUPERFAMILY	Homeodomain-like	56	111	IPR009057	-
	Gso1g0946	337	SUPERFAMILY	Homeodomain-like	159	213	IPR009057	-
	Gso1g0946	337	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	161	213	IPR006447	GO:0003677
	Gso1g0946	337	Pfam	Myb-like DNA-binding domain	165	210	IPR001005	-
	Gso1g0946	337	PANTHER	MYB TRANSCRIPTION FACTOR MYB51	31	314	-	-
	Gso1g0946	337	MobiDBLite	consensus disorder prediction	236	263	-	-
	Gso1g0946	337	Gene3D	-	164	214	-	-
	Gso1g0946	337	ProSiteProfiles	SANT domain profile.	166	214	IPR017884	-
	Gso1g0946	337	ProSiteProfiles	Myb-like domain profile.	158	210	IPR001005	-
	Gso1g0946	337	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	31	314	IPR043363	-
	Gso1g0946	337	Gene3D	-	50	117	-	-
	Gso1g0946	337	SMART	sant	54	106	IPR001005	-
	Gso1g0946	337	SMART	sant	162	212	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso1g0946	Gso-Chr1	38255764	38258579	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Gso1g0946		Myb_DNA-binding	4.5e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso1g0946	-		-	gmx:100813517	666.766