Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0933 ATGTCGGAGGGAAATGCGGAGAGAGGAAAGAGAATTGCCATTATTGGTGTCTCAACCTTATTGTTGGTGGCGATGGTTGTGGCTGTCACAGTTGGTGTCAATGTTAGTGAGAATGGTTCCAACAATGAGGACACAAAAATTGCTTCTTCTGTAAAAGCCGTCCAAACCCTTTGCCATCCCACAAATTATAAGAAAGAATGTGAGGAAAGCCTCATAGCTAGGGCTGGAAATACCACTGATCCAAAAGAACTTATCAAAATTGTCTTCAACATCACCATTACAAAAATTGGCGATAAACTCAAAAAAACTAATCTTTTGCATGAGGTTGAGGAGGATCCCAGAGCCAAGATGGCACTTGACACATGCAAGCAACTCATGGATCTTTCTATTGAGGAGTTAACAAGGTCACTTGATGGAATAGGTGAGTTTGACCTGAAAAATATCGACAAAATCCTCATGAATTTAAAAGTTTGGCTTAGTGGTGCAGTTACATACCAAGATACTTGCTTGGATGGGTTTGAGAACACCACTAGTGACGCTGGTAAAAAGATGAAGGATTTGTTGACGGCAGGCATGCATATGAGCAGCAATGCCCTTGCCATTGTAACGAATTTGGCTGACACTGTTGATGATTGGAATGTCACAGAATTATCTAGGCGTCGCCTCCTTCAAGATTCTAAGCTTCCCGTGTGGGTTGATCAACATAGACTCCTTAATGAAAATGAAAGTCTATTAAGACACAAGCCTAATGTTACTGTAGCCATTGATGGTAGTGGGGATTTCAAAAGCATCAATGAGGCATTGAAGCAAGTGCCTAAGGAAAACCGAAAGCCATTTGTGATCTACATCAAGGAAGGCGTTTACCAAGAGTATGTTGAGGTTACAAAGAAAATGACCCATGTGGTGTTTATTGGTGAAGGTGGAAAAAAGACACGAATAACTGGTAACAAAAACTTCATAGATGGAACAAACACTTACAGAACTGCCACTGTTGCTATTCAAGGAGATTACTTTGTGGCCATCAATATGGGGTTTGAGAATTCTGCTGGACCACAAAAGCATCAAGCAGTAGCATTAAGAGTCCAAGCAGATAAGTCCATTTTCTACAATTGCTCAATGGATGGGTATCAGGACACTCTTTATGTACACACCATGCGTCAATTCTATAGAGATTGCACGATTTCAGGTACCATTGACTTTGTGTTTGGTAATGCACTTGCTATTTTCCAAAATTGCACTTTCGTGGTCCGAAAGCCATTGGAGAACCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAGATACAACAACCATCTGGAATAGTAATCCAAGGGGGATCCATTGTGTCTGATCCTGAGTTCTACTCTGTGAGATTTGAGAACAAGGCTTACCTAGCTCGTCCATGGAAGAATTACTCTAGGACCATCATCATGGACACTTACATTGATGATTTGATTAATGTTGATGGGTATTTGCCATGGCAAGGACTAGAGGGTCCTTCTGGTATGAATACTTGCTTCTATGCCGAGTACCACGACAGTGGCCCGGGTTCAGACAAATCTAAACGTGTGAAATGGGCTGGGATTTGGAATCTCAATTCAAAAGCTGCACGTTGGTTCTCAGCATCTAAGTTTTTTCACGGAACTGACTGGATTGAAGTTACTGGGATTCCTTGCTTTCGTGACATTCCCGCACACCATAGGCACAAAAAGACAAGGCTTAATTGGTAA 1731 0.4159 MSEGNAERGKRIAIIGVSTLLLVAMVVAVTVGVNVSENGSNNEDTKIASSVKAVQTLCHPTNYKKECEESLIARAGNTTDPKELIKIVFNITITKIGDKLKKTNLLHEVEEDPRAKMALDTCKQLMDLSIEELTRSLDGIGEFDLKNIDKILMNLKVWLSGAVTYQDTCLDGFENTTSDAGKKMKDLLTAGMHMSSNALAIVTNLADTVDDWNVTELSRRRLLQDSKLPVWVDQHRLLNENESLLRHKPNVTVAIDGSGDFKSINEALKQVPKENRKPFVIYIKEGVYQEYVEVTKKMTHVVFIGEGGKKTRITGNKNFIDGTNTYRTATVAIQGDYFVAINMGFENSAGPQKHQAVALRVQADKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALAIFQNCTFVVRKPLENQQCIVTAQGRKEIQQPSGIVIQGGSIVSDPEFYSVRFENKAYLARPWKNYSRTIIMDTYIDDLINVDGYLPWQGLEGPSGMNTCFYAEYHDSGPGSDKSKRVKWAGIWNLNSKAARWFSASKFFHGTDWIEVTGIPCFRDIPAHHRHKKTRLNW* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0933 576 Gene3D - 248 564 IPR012334 -
Gso1g0933 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 42 205 IPR006501 GO:0004857
Gso1g0933 576 PANTHER PECTINESTERASE 10 560 - -
Gso1g0933 576 Pfam Plant invertase/pectin methylesterase inhibitor 53 201 IPR006501 GO:0004857
Gso1g0933 576 SUPERFAMILY Pectin lyase-like 247 559 IPR011050 -
Gso1g0933 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 206 IPR035513 -
Gso1g0933 576 SMART PMEI_2 49 201 IPR006501 GO:0004857
Gso1g0933 576 ProSitePatterns Pectinesterase signature 1. 275 294 IPR018040 -
Gso1g0933 576 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Gso1g0933 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 205 IPR035513 -
Gso1g0933 576 CDD PMEI-like_3 56 206 - -
Gso1g0933 576 Pfam Pectinesterase 250 548 IPR000070 GO:0030599|GO:0042545
Gso1g0933 576 PANTHER PECTINESTERASE 10 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0933 Gso-Chr1 37615376 37618331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0933 6 558 Carbohydrate Esterase AT3G05610 49.281 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0933 K01051 - gmx:100777691 1143.26