Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0897 ATGTCAAGTCTACAGTTGTGTCATGTGGTGGATTTGGAGCAAGGGAGTCTCAGTCACCACCGTTCTGTGAGTGGCAGTGACATGAGCATGTGCTTTTCTGATGCTGAGAATGGTTCATGCTATTCCCATTTCTATTCAACAAATGGTGACCCTTATGATGATTACACCATTGGTTGTGTTTCTGATGCTGAGGATTCAAGGAAGGCTTCTTCTGTCACTGATTGTTCAGTGGAGGTGGAAATTGAAAGTGGGGTTCCTGAAATTAAGGTGCATTTGGCCAAAGTGGAGAGGGATTGCAGAATTTGCCATCTTGGTTTGGAGAGTGATAGTCAAGAAGAGTCTGGAGTTCCCATTGAATTGGGCTGTTCTTGTAAGGATGATTTGGGTGCTGCTCACAAGAACTGTGCTGAGGCCTGGTTCAAGATTAAGGGGAATAGGACATGTGAAATATGTCATTCAGTTGCACGGAACGTTTGTGGGGCAAATGAGGAGACAACACAGACATCGAGTGACAGCAACAATGCTAATAATGCAGCATCCACAATCTCAACATCAGCAGAACCTCGAAGATTTTGGCAAGGCCATCGTTTCCTGAATTTTCTGCTTGCTTGTATAGTTTTTGCGTTTGTCATATCGTGGCTTTTTCACTTCAATATGCCCTCGTCGTAA 669 0.441 MSSLQLCHVVDLEQGSLSHHRSVSGSDMSMCFSDAENGSCYSHFYSTNGDPYDDYTIGCVSDAEDSRKASSVTDCSVEVEIESGVPEIKVHLAKVERDCRICHLGLESDSQEESGVPIELGCSCKDDLGAAHKNCAEAWFKIKGNRTCEICHSVARNVCGANEETTQTSSDSNNANNAASTISTSAEPRRFWQGHRFLNFLLACIVFAFVISWLFHFNMPSS* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0897 222 ProSiteProfiles Zinc finger RING-CH-type profile. 91 158 IPR011016 GO:0008270
Gso1g0897 222 PANTHER OS01G0850200 PROTEIN 7 221 - -
Gso1g0897 222 CDD RING_CH-C4HC3_MARCH 99 152 - -
Gso1g0897 222 SMART ringv_2 98 152 IPR011016 GO:0008270
Gso1g0897 222 Pfam RING-variant domain 99 151 IPR011016 GO:0008270
Gso1g0897 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 162 IPR013083 -
Gso1g0897 222 PANTHER ZINC FINGER, RING-CH-TYPE 7 221 - -
Gso1g0897 222 SUPERFAMILY RING/U-box 96 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0897 Gso-Chr1 36688864 36693055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0897 48 222 C3H Transcription Factor Family AT5G05830 55.435 4.67e-65 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0897 - - gmx:100812277 439.884