Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0896 ATGGAACCGGAAGAAACCGCCGCCGCCGCCGACGGAAGCTTCGACGAGGGGCTGCTCGGGCTAGACGACGGCGGCGGCGGCGGCAGGGACAGAGTAAAGGGTCCGTGGTCGCCGGAGGAGGACGCCATTCTAAGCCGTCTGGTGGGCAAGTTCGGCGCGAGAAATTGGAGCCTCATTGCGCGCGGAATCAGCGGAAGATCCGGCAAGTCGTGCCGGCTCCGGTGGTGCAACCAGCTTGACCCCGCCGTCAAGCGCAAACCCTTCACCGATGAGGAGGACCGGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCCACTCTGAGGCGTCGTGGAGTTGGTCATGATACGATTAAATTAGAATCTGTCAGCTTCATGGAAGATGTTAGCTTGGAGAAAGCAAAAGCATCATCGGAAGACACTCTATCATGTGGGGATGTTTCTTTGAAATCCTCAGAAGGGAGAGATGTCAGTTCTATGGAGATCATGGATGATAAATCTGATGACAAAGCACAAACTGAGGGCCAAATACACCATGAAGTCAAGGACCTACCTACCCTTTTTCGGCCAGTAGCACGCGTGAGTGCTTTTAATGTATACCACTCATTTGATGGTACACAGCCTTCAACATCAATTAAAAGACCTGTTCCGATGCAAGGAGCTGTTTTACAATCATCAAAACCAGACATGGAATTTTGTAGAATGCTTGAAGGAATTTGTGGTGATCAGTCAGTGCCTCACCAGTGTGGCCATGGTTGCTGTGCTGCTCCAGATGGTAGAAAGTCCGAAAGCTCTTTGTTGGGACCCGAATTTGTTGAATTTTCGGAACCCCCATCTTTCCCAAATTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAGTAGTAGTGCCAAAATGATGGGCAACACCTCTGGAAGGGTAGTATCTAATGGATCTCAAGTACATATTGGCCATTAA 1053 0.4957 MEPEETAAAADGSFDEGLLGLDDGGGGGRDRVKGPWSPEEDAILSRLVGKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRMIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVGHDTIKLESVSFMEDVSLEKAKASSEDTLSCGDVSLKSSEGRDVSSMEIMDDKSDDKAQTEGQIHHEVKDLPTLFRPVARVSAFNVYHSFDGTQPSTSIKRPVPMQGAVLQSSKPDMEFCRMLEGICGDQSVPHQCGHGCCAAPDGRKSESSLLGPEFVEFSEPPSFPNFELAAIATDISNLAWLKSGLESSSAKMMGNTSGRVVSNGSQVHIGH* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0896 350 SMART sant 84 132 IPR001005 -
Gso1g0896 350 SMART sant 32 81 IPR001005 -
Gso1g0896 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Gso1g0896 350 ProSiteProfiles Myb-like domain profile. 28 79 IPR001005 -
Gso1g0896 350 CDD SANT 35 77 IPR001005 -
Gso1g0896 350 Gene3D - 87 133 - -
Gso1g0896 350 PANTHER - 7 327 - -
Gso1g0896 350 PANTHER MYB PROTEIN-RELATED 7 327 - -
Gso1g0896 350 CDD SANT 87 130 IPR001005 -
Gso1g0896 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 79 IPR017930 -
Gso1g0896 350 Pfam Myb-like DNA-binding domain 36 94 - -
Gso1g0896 350 MobiDBLite consensus disorder prediction 1 36 - -
Gso1g0896 350 Gene3D - 32 84 - -
Gso1g0896 350 SUPERFAMILY Homeodomain-like 30 126 IPR009057 -
Gso1g0896 350 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0896 Gso-Chr1 36584564 36595500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0896 25 350 MYB Transcription Factor Family AT3G09230 52.226 2.05e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso1g0896 Myb_DNA-bind_6 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0896 K09422 - gmx:100811740 677.937