Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0888 ATGGCTGCAAATGAAGATGCTGCCCATGAATTTGCACCAAAGAAGAAGCCACCTTCAGAGGATGAGAAGAGGAAGAAGAAAATTGTGCCCGGGAGTTTGATGAAAGCTTTGATGAGGCCTGGTGGGGGTGATGCTGGACCTTCTGATGGTGACCAGATTATCTATCACTGCACGATTCGAACTTTGGATGGAGTACTTGTGGAGTCTACCAGATCTGATTATGGAGGCAAGGGCATCCCAATAAGACATGTTTTGGGCAAAAGCAAGATGTTATTGGGATTGCTAGAAGGAATTCCATCAATGTTGAAGGGCGAAGTGGCAATGTTCAAGATGAAGCCTCAGTTGCATTATGGTGAGGATGATTGCCCTGTTTCTGCTCCTGATGGTTTTCCTAAAGATGATGATCTTCATTTCGAAATTGAGCTGATAGAATTTTTCAAAGCCAAGGTTGTTACTGATGACTTGGGAGTTGTAAAAAAGGTAGTACGTGAAGGGCAGGGCTGGGAATCTCCAAGAGAACCTTATGAAGTGAAGGCTTGGATTTCAGCAAAGACAGTTACTGGGAAATTGATCATGTCACATACAGAAGGAGAACCATACTTCTTTACATTTGGAAAATCAGAGGTACCTAAAGGCCTTGAAATGGCGATAGGAACAATGGTTCGGGAAGAGAAGGCTGTTATATATGTCACCAGTCAGTATTTAACTGAGTCTCCTCTCATGCCTGTAATAGAAGGTTATGATGAAGTTCATTTTGAAGTGGAGCTGGTTCACTTTATTCAGGTGAGGGACATGCTTGGAGATGGGCGCCTAATAAAATGCCGAATTCATGATGGGAAAGGTGATTTTCCAATGGACTGTCCCCTTCATGACAGTCTGCTTCGTGTTCATTACAAGGGTACTGTTCTCAATGAAGAAAAGAGGGTATTCTATGATACAAGGGTAGACAATGATGGTCAGCCATTGGAGTTCTATTCTGGAGAAGGGCTTGTGCCAGAGGGATTTGAAATGAGTGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCAAGGCCTGTAAATGTCCCTGAGGGTGCTCATATTCAGTGGGAAATAGAGCTTCTAGGTTTTGAAACGCCAAAGGACTGGACTGGATTGGACTTTAAAAGTATAATGAATGAAGCTGAAAACATCAGAAACACGGGTAACAGGCTGTTCAAAGAAGGAAAATATGAACTTGCCAAGGCAAAGTATGAAAAGGTGCTTCGAGAATTTAATCATGTTAATCCACAAGATGACGAAGAAGGAAAATTTTTTGCTGACACTCGTAATTTGCTACACCTGAATGTTGCTGCATGCCATCTAAAATTGGGAGAATGCAGAAAGTCCATTGAGACTTGCAATAAGGTTTTGGAAGCAAATCCTGCACATGTCAAGGGTCTTTATCGTCGTGGAATGGCCTACATGGCTGCTGGAGATTTTGAAGAAGCGAGGGCTGATTTCAAAATGATGATGAAAGTGGACACGTCAACTGAATCAGATGCAACTGCTGCTCTTCAAAAACTGAAGCAGAAGGAGCAGGATGTTGAGAAGAAAGCTAGGAAACAATTTAAAGGGCTATTTGATAAGAAGCCTGGAGAGATTGCGGAAGCTAAAGCTGATGTAGATGGAGATCTGATCACAAGTGAAATCCAGAAGGACGATGAAGTACATGGGGACTCCGATGGAACAAATTCAGAGGACTCACATGAAGCTCCACCTGAGGCACAACGAACTGGATAA 1797 0.429 MAANEDAAHEFAPKKKPPSEDEKRKKKIVPGSLMKALMRPGGGDAGPSDGDQIIYHCTIRTLDGVLVESTRSDYGGKGIPIRHVLGKSKMLLGLLEGIPSMLKGEVAMFKMKPQLHYGEDDCPVSAPDGFPKDDDLHFEIELIEFFKAKVVTDDLGVVKKVVREGQGWESPREPYEVKAWISAKTVTGKLIMSHTEGEPYFFTFGKSEVPKGLEMAIGTMVREEKAVIYVTSQYLTESPLMPVIEGYDEVHFEVELVHFIQVRDMLGDGRLIKCRIHDGKGDFPMDCPLHDSLLRVHYKGTVLNEEKRVFYDTRVDNDGQPLEFYSGEGLVPEGFEMSVRLMLPGEIALVTCPPDYAYDKFPRPVNVPEGAHIQWEIELLGFETPKDWTGLDFKSIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKFFADTRNLLHLNVAACHLKLGECRKSIETCNKVLEANPAHVKGLYRRGMAYMAAGDFEEARADFKMMMKVDTSTESDATAALQKLKQKEQDVEKKARKQFKGLFDKKPGEIAEAKADVDGDLITSEIQKDDEVHGDSDGTNSEDSHEAPPEAQRTG* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0888 598 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 174 260 IPR001179 GO:0003755
Gso1g0888 598 MobiDBLite consensus disorder prediction 8 29 - -
Gso1g0888 598 SUPERFAMILY TPR-like 397 540 IPR011990 GO:0005515
Gso1g0888 598 Gene3D - 261 382 IPR046357 GO:0003755
Gso1g0888 598 Coils Coil 517 540 - -
Gso1g0888 598 Gene3D - 1 148 IPR046357 GO:0003755
Gso1g0888 598 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 291 383 IPR001179 GO:0003755
Gso1g0888 598 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 143 IPR001179 GO:0003755
Gso1g0888 598 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 173 257 IPR001179 GO:0003755
Gso1g0888 598 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 292 380 IPR001179 GO:0003755
Gso1g0888 598 ProSiteProfiles TPR repeat profile. 483 516 IPR019734 GO:0005515
Gso1g0888 598 Gene3D Tetratricopeptide repeat domain 394 548 IPR011990 GO:0005515
Gso1g0888 598 SUPERFAMILY FKBP-like 265 389 - -
Gso1g0888 598 Pfam Tetratricopeptide repeat 484 507 IPR019734 GO:0005515
Gso1g0888 598 MobiDBLite consensus disorder prediction 557 598 - -
Gso1g0888 598 SMART tpr_5 449 482 IPR019734 GO:0005515
Gso1g0888 598 SMART tpr_5 400 433 IPR019734 GO:0005515
Gso1g0888 598 SMART tpr_5 483 516 IPR019734 GO:0005515
Gso1g0888 598 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PASTICCINO1 68 557 IPR031135 GO:0030154|GO:0042761|GO:0099402
Gso1g0888 598 SUPERFAMILY FKBP-like 25 149 - -
Gso1g0888 598 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 146 IPR001179 GO:0003755
Gso1g0888 598 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 68 557 - -
Gso1g0888 598 SUPERFAMILY FKBP-like 151 259 - -
Gso1g0888 598 Gene3D - 149 260 IPR046357 GO:0003755
Gso1g0888 598 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0888 Gso-Chr1 36062609 36076529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0888 47 548 Calmodulin-binding Proteins AT5G48570 29.883 1.97e-61 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0888 - - gmx:100527937 1214.13