Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0869 ATGGTAACTTTTTTTTTTTTCTTCCATACAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGGGGTCGTATCTTAGCCGGTACTTGTCACAGTGCTAAGATGTCAAGGACCATTATTGTTAGGAGGAATTATCTTCATTTTATTAAGAAATACCAGAGATATGAAAAGCGTCATTCAAATATTCCAGCACACATATCACCTTGTTTCCGTGTTAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCAATCTCGAAGACGGTGAGGTTCAATGTGTTGAAAGTGATCCCAGGTGGATCCTCTAGCGGTGCAAAGAAGGGTTTTACTGGAATGTGA 357 0.409 MVTFFFFFHTGTYIDKKCPFTGNVSIRGRILAGTCHSAKMSRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPGGSSSGAKKGFTGM* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0869 118 Pfam Ribosomal protein S17 33 101 IPR000266 GO:0003735|GO:0005840|GO:0006412
Gso1g0869 118 TIGRFAM uS17_arch: ribosomal protein uS17 15 102 IPR028333 -
Gso1g0869 118 SUPERFAMILY Nucleic acid-binding proteins 27 106 IPR012340 -
Gso1g0869 118 ProSitePatterns Ribosomal protein S17 signature. 80 92 IPR019979 GO:0003735|GO:0005840|GO:0006412
Gso1g0869 118 Pfam Ribosomal_S17 N-terminal 10 31 IPR032440 -
Gso1g0869 118 Gene3D - 8 117 - -
Gso1g0869 118 PRINTS Ribosomal protein S17 family signature 47 70 IPR000266 GO:0003735|GO:0005840|GO:0006412
Gso1g0869 118 PRINTS Ribosomal protein S17 family signature 80 90 IPR000266 GO:0003735|GO:0005840|GO:0006412
Gso1g0869 118 PRINTS Ribosomal protein S17 family signature 90 97 IPR000266 GO:0003735|GO:0005840|GO:0006412
Gso1g0869 118 PANTHER BNAA06G38660D PROTEIN 10 117 - -
Gso1g0869 118 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 117 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0869 Gso-Chr1 35175245 35176640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0869 11 118 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 87.037 6.36e-69 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0869 K02949 - gmx:100500186 219.55