Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0866 ATGATAGACAAAGATGAGTGTTTGTCCCATGACGTAAAGTACGAGGGTGACACTGTTCATGTCTCTTTCATTGTTATTAAGGCTGATTCTCCCTGGCATTACGACGACGAAGGTGTCGATCTCGTGGCATACATGATACTCCATGACATTCATGCTGTAGTTGAAAGCTTTGAGAAGGCACTGACCTTGGAGCCAAATGATGCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACCAGTAAGTCCAGACCATTTGAGTATTTGAGGCTTACCACTCTTGGAGTCATTGGGGCCTTAGTGAAGGTTGATGATACAAAGGTTATAAGTTTCCTTCTTTCAACAGACAGAGATTATTTCGTTGTGCCTGCGAAGTATGGAAATGGATCTAAATCTTTGGAGCAACTGAGCATTATATTTGGAGCAACTGAATATACTACAGCTATTGACATTTGGTCAGTTGGCTGTGTATTGGTTGAGCTTATGCTAGGACAGCCCTTGTTCCTCGGTGAGAGTGGAGTTGATCAGCTTGTTGGGATCATCAAGGCTGAATTAGCTTACTTGGGTGATTCCTTGTTTGAAACACTGATTCTCTGA 600 0.42 MIDKDECLSHDVKYEGDTVHVSFIVIKADSPWHYDDEGVDLVAYMILHDIHAVVESFEKALTLEPNDAHIPLYLYPFLNTTSKSRPFEYLRLTTLGVIGALVKVDDTKVISFLLSTDRDYFVVPAKYGNGSKSLEQLSIIFGATEYTTAIDIWSVGCVLVELMLGQPLFLGESGVDQLVGIIKAELAYLGDSLFETLIL* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0866 199 PANTHER BNAA05G20110D PROTEIN 67 117 - -
Gso1g0866 199 Gene3D - 45 122 IPR011989 -
Gso1g0866 199 Pfam Cell differentiation family, Rcd1-like 67 117 - -
Gso1g0866 199 Gene3D Transferase(Phosphotransferase) domain 1 139 183 - -
Gso1g0866 199 PANTHER UNCHARACTERIZED 67 117 - -
Gso1g0866 199 SUPERFAMILY Protein kinase-like (PK-like) 139 184 IPR011009 -
Gso1g0866 199 ProSiteProfiles Protein kinase domain profile. 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0866 Gso-Chr1 35108579 35113855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0866 139 178 MAP Kinase Gene Family AT2G46070 60.000 2.51e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gso1g0866 Rcd1 4.3e-21 No_clan
TR Rcd1-like Gso1g0866 Rcd1 4.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0866 K12606 - gmx:100801266 98.9821