Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0861 ATGTTGAGCCGCGGGGCGCATGGCGAAGTGGTTGGTTCTGGTGAGAGTGGTGAGGATGAGCTGTATGAGCAGCAGTGGAAGGCATGCGCGGGACCACTGGTGGATGTTCCTCGTGTTGGCCAGAGAGTCTTCTATTTCCCACAAGGCCACATGGAGCAATTAGAGGCTTCAACAAACCAGGAACTGAATCAGAGGATTCCTTTGCTGAAGCTTCCCACGAAGATCCTATGTCGAGTTGTGAATGTTCATTTACTGGCTGAGCAAGAAACGGACGAGGTTTATGCGCAAATTACTTTGGTGCCGGAATCTAGTCAAGACGAGCCTACAAATGCTGATCCGTGCACTGCTGAACCTCCAAGAGCACCAGTTCACTCGTTCAGCAAGGTCTTGACTGCTTCAGATACCAGCACCCATGGAGGCTTCTCCGTTCTCAGGAAACATGCCACGGAATGCCTTCCTGTGTTGGACATGTCCCAACCAACACCAACTCAGGAATTGGTTGCAAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAACCACGCAGACACTTGCTCACGACTGGCTGGAGTACTTTTGTGACCTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTCTTGAGAGGGGACAATGGGGAATTACGCGTGGGCGTAAGACGTCTAGCTCGTCAAGCAAGTAGCATGCCTTCATCAGTGATTTCTAGTCAAAGCATGCACCTGGGGGTTCTTGCAACCGCCTCTCATGCTGTTGCAACTCAGACTCTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAATTCATCATAGGCGTGAACAAGTATTTAGAGGCTATGGACAAAAAGTTCAGTGTCGGCATGAGGTTTAAGATGAGATTCGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAGTGGAAGATATTTCTCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAACCTGCAGCTGTTCCCAGACCTGATAGGGTCTCACCATGGGAGATAGAACCCTTTGTTGCTTCTGCTTCTACACCCTCAGTTCAACCTACTATGGTAAAGACTAAAAGGCCCCGGCCACCCAGCGAAACTCCAGATGTTGACACAACATCTGTTGCTTCTGTTTTCTGGGATGCTGGTCTGCAACAGGCTGACATGGCACAAAAAAATGTTTTGGCGGAAAGCAAATGGAATGACAATACTGGTACGTGGCATCATATGCAAACTGACATGAATAGTAAAAGCAACAGTGGCAACACTATGTTAAGGAATCAGACAGAAGGAAGTTGGCTATCTTCTCCGCATTCTAGTTGTCCCTCTCATTTGTTTCAGGACGTAACAGATGATAGCAAGATTGTCTCAGCTTGGCCGGTTTCAAAGCCTCACTCATCCAAATTGAACAATGATCATGTGCTCGACCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACAAGTTATCGGTTGTTTGGAATTGACCTTATTGATCCTTCTAGGAACTCTCCTTCTGTAGAGAAGGCATCTGCACAAGCAGTAAATGTACCCAAAGTTACTACTGAAGGCTGTACCAGCACCTTGTCCCGAACCGATGCTGGCCATAAGTCAGATGTATCAATGGCTTCTTCCATGGAGAGGAAACAAGAACAGCTGCAAGTATCACCAAAGGATACTCAGAGCAAGCAAATTTGTAGAAGTCGAACCAAGGTTCAAATGCAGGGAGTTGCAGTGGGTCGTGCTGTGGATTTGACCATGTTGGATGGGTACGGTCAACTTATAAATGAATTGGAGGATATGTTTAACATCAAGGGACAGCTTCAACACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGTGACATGATGCTTGTGGGAGATGATCCATGGCCCGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTTGTGGAAGCAAACTGCCAATCTCCTCAGTGGAAGACGGGACCGTAATAAGCTCAGACACGACCGAAACCTGA 2079 0.4646 MLSRGAHGEVVGSGESGEDELYEQQWKACAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESSQDEPTNADPCTAEPPRAPVHSFSKVLTASDTSTHGGFSVLRKHATECLPVLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGVNKYLEAMDKKFSVGMRFKMRFEGDDSAETDKRFSGTIVGVEDISPHWVNSKWRSLKVQWDEPAAVPRPDRVSPWEIEPFVASASTPSVQPTMVKTKRPRPPSETPDVDTTSVASVFWDAGLQQADMAQKNVLAESKWNDNTGTWHHMQTDMNSKSNSGNTMLRNQTEGSWLSSPHSSCPSHLFQDVTDDSKIVSAWPVSKPHSSKLNNDHVLDQVDKESKVETATSYRLFGIDLIDPSRNSPSVEKASAQAVNVPKVTTEGCTSTLSRTDAGHKSDVSMASSMERKQEQLQVSPKDTQSKQICRSRTKVQMQGVAVGRAVDLTMLDGYGQLINELEDMFNIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSCGSKLPISSVEDGTVISSDTTET* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0861 692 PANTHER AUXIN RESPONSE FACTOR 15 681 - -
Gso1g0861 692 MobiDBLite consensus disorder prediction 363 385 - -
Gso1g0861 692 Gene3D - 576 669 - -
Gso1g0861 692 ProSiteProfiles PB1 domain profile. 581 662 IPR000270 GO:0005515
Gso1g0861 692 SUPERFAMILY CAD & PB1 domains 583 657 - -
Gso1g0861 692 Gene3D - 123 227 IPR015300 -
Gso1g0861 692 MobiDBLite consensus disorder prediction 428 455 - -
Gso1g0861 692 Gene3D - 287 362 - -
Gso1g0861 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 681 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso1g0861 692 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Gso1g0861 692 Pfam Auxin response factor 252 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso1g0861 692 SMART B3_2 126 228 IPR003340 GO:0003677
Gso1g0861 692 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Gso1g0861 692 Pfam AUX/IAA family 520 617 IPR033389 -
Gso1g0861 692 Pfam AUX/IAA family 624 665 IPR033389 -
Gso1g0861 692 MobiDBLite consensus disorder prediction 543 576 - -
Gso1g0861 692 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Gso1g0861 692 CDD B3_DNA 124 226 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0861 Gso-Chr1 34470086 34474957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0861 17 674 B3 DNA Binding Superfamily AT4G23980 58.974 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso1g0861 AUX_IAA 2.2e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0861 K14486 - gmx:100803911 1373.99