Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso1g0845 | ATGGAACAGGGTCAATGCTGGACAAAGAGGAAGAAGTACTCTTTGAGCTCTAGTACTGGTTCACCAACAAACCCTTCCTATGGTGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGCATATGGCCTCCAAGATCCTACTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAACGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCACTAGCCCCCACAATGAAATTCTATGCCATGACCTTGAAACTCAGCTGCACAAGCCAGTTCAAAGTCCTTTTGCTTCTCTAGGTGGTTATCTATATCCTTCTCCTCTTTGTGGATTGGCTTGTATGAAAACTAACCCTAATTGTGATCCTGATTTTGTTGCTTCACCTTCTTCATCACCCTCGCCTTCCAAGGCCTTATTGGCTCCATCAGCTAATATTGGTACCTTCAGAGAGGAAACCATGATTCCACTTTATGATTCCTCTATTCTCCACAAGATTTCTCCTGCCAGTAATTCTTCTGAATCATGGCCAAATTCAGCTGAAGATCATAGATTATATTCATGTAAGTTCCACCCTCAAGCTGATACTACGAAACCCTCCAAGAGAATAATGGATTTCAGATGTAGGGGTAATAAGGGGAATAATGATGATATTGATGGGGATATAAACTTTAATTCAGTTGTGTATAGAACTCACCCATCTTTGCAGTTTGAGAGTACTAAAGAGCCAGATCATATCAGTTGCAAGAAGAGGAAAACAGATGCTTCCTCAACTCTATTTTCCCCAAAGTCAAGCTCAGTTGATAGGCATCAAGTGCAGCCAAAGATGTTTGAGTTTAGCCCTAGCTCAATGGAAGAGCTAGATCTGGAGTTAAGGCTTGGGAACAGGTCCAAGATATAG | 942 | 0.4257 | MEQGQCWTKRKKYSLSSSTGSPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPTSPHNEILCHDLETQLHKPVQSPFASLGGYLYPSPLCGLACMKTNPNCDPDFVASPSSSPSPSKALLAPSANIGTFREETMIPLYDSSILHKISPASNSSESWPNSAEDHRLYSCKFHPQADTTKPSKRIMDFRCRGNKGNNDDIDGDINFNSVVYRTHPSLQFESTKEPDHISCKKRKTDASSTLFSPKSSSVDRHQVQPKMFEFSPSSMEELDLELRLGNRSKI* | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso1g0845 | 313 | Pfam | C2H2-type zinc finger | 54 | 78 | - | - | |
Gso1g0845 | 313 | MobiDBLite | consensus disorder prediction | 265 | 286 | - | - | |
Gso1g0845 | 313 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Gso1g0845 | 313 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 56 | 76 | IPR013087 | - | |
Gso1g0845 | 313 | PANTHER | OS07G0101800 PROTEIN | 1 | 312 | - | - | |
Gso1g0845 | 313 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Gso1g0845 | 313 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 54 | 81 | IPR013087 | - | |
Gso1g0845 | 313 | MobiDBLite | consensus disorder prediction | 267 | 285 | - | - | |
Gso1g0845 | 313 | Gene3D | Classic Zinc Finger | 51 | 103 | - | - | |
Gso1g0845 | 313 | SMART | c2h2final6 | 54 | 76 | IPR013087 | - | |
Gso1g0845 | 313 | SUPERFAMILY | beta-beta-alpha zinc fingers | 51 | 80 | IPR036236 | - | |
Gso1g0845 | 313 | PANTHER | C2H2 AND C2HC ZINC FINGER PROTEIN | 1 | 312 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso1g0845 | Gso-Chr1 | 33766477 | 33768208 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso1g0845 | 30 | 85 | C2H2 Transcription Factor Family | AT2G37740 | 82.143 | 8.02e-26 | 102 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gso1g0845 | zf-C2H2_6 | 1.4e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso1g0845 | - | - | gmx:100801427 | 620.542 |