Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0845 ATGGAACAGGGTCAATGCTGGACAAAGAGGAAGAAGTACTCTTTGAGCTCTAGTACTGGTTCACCAACAAACCCTTCCTATGGTGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGCATATGGCCTCCAAGATCCTACTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAACGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCACTAGCCCCCACAATGAAATTCTATGCCATGACCTTGAAACTCAGCTGCACAAGCCAGTTCAAAGTCCTTTTGCTTCTCTAGGTGGTTATCTATATCCTTCTCCTCTTTGTGGATTGGCTTGTATGAAAACTAACCCTAATTGTGATCCTGATTTTGTTGCTTCACCTTCTTCATCACCCTCGCCTTCCAAGGCCTTATTGGCTCCATCAGCTAATATTGGTACCTTCAGAGAGGAAACCATGATTCCACTTTATGATTCCTCTATTCTCCACAAGATTTCTCCTGCCAGTAATTCTTCTGAATCATGGCCAAATTCAGCTGAAGATCATAGATTATATTCATGTAAGTTCCACCCTCAAGCTGATACTACGAAACCCTCCAAGAGAATAATGGATTTCAGATGTAGGGGTAATAAGGGGAATAATGATGATATTGATGGGGATATAAACTTTAATTCAGTTGTGTATAGAACTCACCCATCTTTGCAGTTTGAGAGTACTAAAGAGCCAGATCATATCAGTTGCAAGAAGAGGAAAACAGATGCTTCCTCAACTCTATTTTCCCCAAAGTCAAGCTCAGTTGATAGGCATCAAGTGCAGCCAAAGATGTTTGAGTTTAGCCCTAGCTCAATGGAAGAGCTAGATCTGGAGTTAAGGCTTGGGAACAGGTCCAAGATATAG 942 0.4257 MEQGQCWTKRKKYSLSSSTGSPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPTSPHNEILCHDLETQLHKPVQSPFASLGGYLYPSPLCGLACMKTNPNCDPDFVASPSSSPSPSKALLAPSANIGTFREETMIPLYDSSILHKISPASNSSESWPNSAEDHRLYSCKFHPQADTTKPSKRIMDFRCRGNKGNNDDIDGDINFNSVVYRTHPSLQFESTKEPDHISCKKRKTDASSTLFSPKSSSVDRHQVQPKMFEFSPSSMEELDLELRLGNRSKI* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0845 313 Pfam C2H2-type zinc finger 54 78 - -
Gso1g0845 313 MobiDBLite consensus disorder prediction 265 286 - -
Gso1g0845 313 MobiDBLite consensus disorder prediction 1 30 - -
Gso1g0845 313 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Gso1g0845 313 PANTHER OS07G0101800 PROTEIN 1 312 - -
Gso1g0845 313 MobiDBLite consensus disorder prediction 1 31 - -
Gso1g0845 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Gso1g0845 313 MobiDBLite consensus disorder prediction 267 285 - -
Gso1g0845 313 Gene3D Classic Zinc Finger 51 103 - -
Gso1g0845 313 SMART c2h2final6 54 76 IPR013087 -
Gso1g0845 313 SUPERFAMILY beta-beta-alpha zinc fingers 51 80 IPR036236 -
Gso1g0845 313 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0845 Gso-Chr1 33766477 33768208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0845 30 85 C2H2 Transcription Factor Family AT2G37740 82.143 8.02e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso1g0845 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0845 - - gmx:100801427 620.542