Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0842 ATGGCCACCAAACTCAACATGCTCCTCAAGCTCCTGCCTTTGTTGGTGTTCCTTCTGATCCCAGTTTCATCTCAGCCAAACCAGCTCTTCTATGCTGGATTCAAGGGTCTGGGAAGCAACAACATGACCCTTGATGGGGTTGCAGAAATAGAGCCAAATGGGGTACTGAAACTCACAAATGATTCAAGTAAAGTGATGGGTCATGCTTTTTATCCAACCCCTTTTCGGTTCAAGAACTCTAGTGGTGGTAAAGCTTTCTCCTTTTCTTCCTCTTTTGCTTTGGCTATTGTTCCTGAGTTTCCAAAGCTAGGAGGGCATGGCCTTGCTTTTACAATTGCTCCTTCTAAGGATCTGAAGGCTCATCCAAGCCAATATCTTGGTATTCTTGACTCAAGTAACATAGGGAACTTCTCCAACCACCTCTTTGCTGTTGAGTTTGACACAGCAAAGGATTTTGAGTTTGGGGACATTGATGACAACCATGTTGGAATTGACATCAATAGCTTGGCCTCCAATGCCTCTGCATCTGCAGGTTACTACACTGGGGATGATGATTCAAGCAAACAGAATCTCACCCTCCAAAGTAGGGTACCTATTCTAGCTTGGGTTGATTATGATGCTGCTAAAAGTGTGGTCCATGTCACGATTTCTGCATCTTCTACCAAACCCAAAAGGCCACTCTTGTCCTATCATGTGGATCTTTCACCAATCCTTAAGGAATCCATGTATGTTGGGTTCTCTGCATCAACAGGGTTGCTTGCTAGCTCCCATTACATCTTGGGATGGAGCTTCAAAATCAATGGGCCAGCTCCACCCCTTGATCTCTCTTCTCTCCCACAGCTTCCAGGGCCAAAGAAGAAACACACATCTCTGATAATTGGGGTTTCAGTCTCTGTTGTTGTTCTTGCATTGTGTGCTGTCTTATTTGGCATCTACATGTACAGAAGGTACAAGAATGCTGATGTCATAGAAGCTTGGGAGCTAGAGATTGGGCCACATAGGTACTCCTACCAAGAGCTCAAGAAAGCAACAAAAGGGTTCAAGGACAAAGAGCTGCTTGGACAAGGTGGGTTTGGGAGTGTTTACAAAGGAACATTGCCAAATTCCAATACCCAGGTTGCTGTTAAGAGAATTTCACATGACTCCAATCAAGGCCTGAGGGAATTTGTATCAGAAATAGCCAGCATAGGCCGGCTTCGCCACCGGAATTTGGTTCAGTTGCTGGGGTGGTGTCGCCGCCTGGGTGACCTCCTCCTTGTGTATGATTTCATGGAAAATGGGAGCTTAGACAAGTACTTGTTTAACGAGCCAGAAACAATCCTAAGTTGGGAGCAAAGGTTTAAGGTCATCAAGGATGTTGCTTCAGCCCTTTTGTATCTTCACGAGGGCTATGAGCAGGTGGTGATACATAGAGATGTGAAGGCTAGCAATGTGCTTCTAGACGGTGAACTCAATGGAAGACTAGGAGATTTTGGATTAGCAAGGTTGTATGAACATGGGACTAATCCAAGTACCACAAGGGTGGTGGGGACCTTGGGCTATTTGGCACCTGAGGTGCCTAGGACAGGGAAGGCCACTCCTAGCTCAGATGTTTTTGCATTTGGTGCACTTTTACTAGAGGTGGCATGTGGGCTAAGACCACTTGAGCCAAAGGCAATGCCAGAAGATATGGTTTTGGTTGATTGTGTGTGGAACAAATTCAAACAAGGGAGAATACTCAATATGGTGGACCCTAAACTAAATGGTGTTTTTAATGAAAGAGAGATGCTCATGGTGTTGAAATTGGGGCTTCTGTGTTCAAATGGTTCACCCACTGCTAGGCCTAGCATGAGACAGGTGGTGAGGTTTTTGGAAGGAGAAGTTGGTGTGCCAGATGAGTTGAGAAAGCCGGGAGAGGGAGGTTACCAGGAGGGTTTTGATGAATTCTTGCACTCACTTGAATCTTCTTCGTTTGATCAGATGAACACAGGTTCCTATGGTAGAAATAGAGACATGGATTCTAGTTTTCCATCTTTAACTGGTACATCTCTTTTTAGTCCCCATGGTAAAGGACAAACAATGTGA 2064 0.4511 MATKLNMLLKLLPLLVFLLIPVSSQPNQLFYAGFKGLGSNNMTLDGVAEIEPNGVLKLTNDSSKVMGHAFYPTPFRFKNSSGGKAFSFSSSFALAIVPEFPKLGGHGLAFTIAPSKDLKAHPSQYLGILDSSNIGNFSNHLFAVEFDTAKDFEFGDIDDNHVGIDINSLASNASASAGYYTGDDDSSKQNLTLQSRVPILAWVDYDAAKSVVHVTISASSTKPKRPLLSYHVDLSPILKESMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPQLPGPKKKHTSLIIGVSVSVVVLALCAVLFGIYMYRRYKNADVIEAWELEIGPHRYSYQELKKATKGFKDKELLGQGGFGSVYKGTLPNSNTQVAVKRISHDSNQGLREFVSEIASIGRLRHRNLVQLLGWCRRLGDLLLVYDFMENGSLDKYLFNEPETILSWEQRFKVIKDVASALLYLHEGYEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYEHGTNPSTTRVVGTLGYLAPEVPRTGKATPSSDVFAFGALLLEVACGLRPLEPKAMPEDMVLVDCVWNKFKQGRILNMVDPKLNGVFNEREMLMVLKLGLLCSNGSPTARPSMRQVVRFLEGEVGVPDELRKPGEGGYQEGFDEFLHSLESSSFDQMNTGSYGRNRDMDSSFPSLTGTSLFSPHGKGQTM* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0842 687 Pfam Legume lectin domain 30 278 IPR001220 GO:0030246
Gso1g0842 687 ProSiteProfiles Protein kinase domain profile. 347 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0842 687 Gene3D Phosphorylase Kinase; domain 1 332 423 - -
Gso1g0842 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Gso1g0842 687 CDD STKc_IRAK 353 619 - -
Gso1g0842 687 CDD lectin_legume_LecRK_Arcelin_ConA 31 268 IPR001220 GO:0030246
Gso1g0842 687 SMART serkin_6 347 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0842 687 MobiDBLite consensus disorder prediction 653 687 - -
Gso1g0842 687 Gene3D Transferase(Phosphotransferase) domain 1 424 629 - -
Gso1g0842 687 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 286 IPR013320 -
Gso1g0842 687 SUPERFAMILY Protein kinase-like (PK-like) 329 625 IPR011009 -
Gso1g0842 687 PANTHER - 9 671 - -
Gso1g0842 687 Gene3D - 29 267 - -
Gso1g0842 687 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 9 671 - -
Gso1g0842 687 Pfam Protein kinase domain 347 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0842 687 ProSitePatterns Protein kinases ATP-binding region signature. 353 376 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0842 Gso-Chr1 33458713 33461367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0842 22 686 Receptor kinase-like Gene Family AT3G55550 58.321 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso1g0842 Pkinase 3.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0842 - - gmx:100801247 1306.97