Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0825 ATGTCTCCGCCATTGCTGGTTACCGAAGATGAAGGGCAGTGCCATGCCTCGATGGTAGCATCTGCATCTTCACCATCCCTGAACTGTTTCTCCCTAAATGAGGCCGGATTTAAAGAATGCAATTACCTGGGATTGTCAGATTGCTCTTCGGTGGACAGTTCTACTGTCCCGAATTTGTCTGATGAGAAAAAGGAGAATCTGAATTTGAAGGCTACTGAGTTGAGGCTTGGCCTTCCGGGATCCCAGTCACCTGAAAGGGAGACAGAACTTTTCTCGTTGAGCTCAACAAAACTTGATGAGAAACCACTGTTCCCTTTGCTTCCTACAAAGGATGGAATCTGCTCATTGTCTCAAAAAACTGTGGTCTCGGGCAACAAAAGAGGTTTTGCTGACACAATGGACCCTGAGTTTCCTGGCAATGCAGGGATAAACATGATGCTATCACCTAAACCTTCTGGAGTTCAGCCTACCACAGTGAAAGAAATACCAAGCAAGGTGTTACAAGAACTTCCTTCAGCGGCAAATGGAACTGGTCATAACCATACATCAGGAGCTTCTATCAGTGGCAGTGCACCGGCTGCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCATTGGCCACCACTTCAAAGAATAATGATGAAGTAGATGGAAAACTGGGTGCAGCAGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTGAGGAAGGTAGATCTAAGAAATTATACAATGTACCAGGAACTGTCTTCTGCCCTTGAGAAAATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTCGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGACTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAATCCAGGAGCAGGTGCTAG 1053 0.4577 MSPPLLVTEDEGQCHASMVASASSPSLNCFSLNEAGFKECNYLGLSDCSSVDSSTVPNLSDEKKENLNLKATELRLGLPGSQSPERETELFSLSSTKLDEKPLFPLLPTKDGICSLSQKTVVSGNKRGFADTMDPEFPGNAGINMMLSPKPSGVQPTTVKEIPSKVLQELPSAANGTGHNHTSGASISGSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKLGAAALFVKVSMDGAPYLRKVDLRNYTMYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSRSRC* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0825 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 343 IPR003311 GO:0005634|GO:0006355
Gso1g0825 350 SUPERFAMILY CAD & PB1 domains 230 331 - -
Gso1g0825 350 Gene3D - 226 343 - -
Gso1g0825 350 PANTHER AUXIN-INDUCED PROTEIN 2 343 - -
Gso1g0825 350 MobiDBLite consensus disorder prediction 172 191 - -
Gso1g0825 350 Pfam AUX/IAA family 72 341 IPR033389 -
Gso1g0825 350 ProSiteProfiles PB1 domain profile. 230 334 IPR000270 GO:0005515
Gso1g0825 350 MobiDBLite consensus disorder prediction 172 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0825 Gso-Chr1 32525347 32531220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0825 232 330 B3 DNA Binding Superfamily AT1G19220 30.303 2.04e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso1g0825 AUX_IAA 2.4e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0825 K14484 - gmx:100500373 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0825 1 32525347 32531220 Gso9g1677 9 41143913 41148211 GST