Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0809 ATGACCGAGTACCGGATGAACCTGTGGACCGACGACAACTCCTCCGTCATGGAGGCCTTCATGAGCTCCTCCGACCTCTCCTCCCTCTGGCTCCCCACGCCGCAATCCGCCGCCTCTACTACCACTCCTGGACTGGAAACCACCCGAGCACCGCCGCCTCAGTCCCACTCCCTCCTCAACCAGGAGACCCTCCAGCAGCGCCTCCAGACACTTATCGAAGGCGCCCGAGAGAGCTGGACCTACGCAATCTTCTGGCAGTCTTCCTACGACTATTCCTCCGGCACCTCCCTTCTCGGCTGGGGAGACGGTTATTACAAGGGTGAGGAGGACAAAGTCAAAGCCAAAGGCAAAACCCCCAAAACGACGTCGTCCGCGGAGCAGGACCACCGCAAAAAAGTCCTCCGCGAACTCAATTCCTTAATCTCTGGCCCCTCCGCTTCCGTTGACGACGTCGACGAAGAAGTCACCGACACCGAGTGGTTCTTCCTCGTGTCGATGACTCAGTCCTTCGTCAACGGAAGCGGCCTCCCGGGTCAGGCTTTTTTTAACTCGAGCCCGGTCTGGGTTGCCGGGCCGGACCGGCTGTCCGAGTCGGTCTGCGAACGGGCCCACCAGGGGCAGATGTTCGGGCTCCAGACTCTGGTCTGCATACCGTCCGCAAATGGCGTCGTTGAGCTCGCCTCCACGGAGGTGATTTTCCAGAACCCTGATCTGATGAACAAGGTGCGCGATTTGTTCAACTTCAACAACAACCCTGAAACTGGTTCCTGGGCGTTGAATTGCGTTGCCACCACCGATCAGGGGGAGAACGACCCTTCCTCACTCTGGCTCAACCCTGAAATCAGAGACTCCTCTACCGTTGCGCCGCCGAATTCAACGGTTAACAAGACTCTGCAGTTCGAAACCCCTGGTTCCAGTACCTTAACCGATACCCCTAGTGCTGCTGCTGTTCATGTACCTAAATCTAATGGCCAGGGTTTCTTCTCGAGGGAATTGAACTTTTCGAATTCATTGAAGCCTGAATCTGGTGAAATTCTGAGCTTTGGAGAGAGCAAGAAGAGCTCTTACAACGGGAGTTTCTTTCCCGGTGTTGTTGCAATTGAGGAGAACAACAAGAAGAGGTCTCCCGTTTCTCGGAGCAGCATTGACGATGGGATGCTGTCCTTCACATCCCTGCCGGCTGCAAATATAAAATCTGGTAGTGGTGGTGCCGGTGCCGGTGGTGGTGATTCGGATCACTCGGATCTGGAAGCTTCCATGGTGAAACAGGCAGACAGCAGAGTGATGGAGCCGGAGAAACGGCCTCGGAAGAGGGGGCGAAAGCCGGCCAACGGCAGAGAGGAGCCGCTGAATCACGTGGAAGCCGAGAGACAAAGGAGAGAAAAGCTGAATCAAAGATTCTATGCTCTACGAGCTGTAGTTCCAAATGTATCCAAGATGGACAAGGCATCGTTGTTAGGTGACGCCATATCGTACATAAATGAGCTGAAATTGAAGCTCAACGGGCTGGATTCAGAGAAAGGGGAATTGGAGAAGCAATTGGATTCAGCCAAGAAGGAACTTGAGCTCGCGACCAAAAACCCTCCTCCTCCTCCACCACCACCACCTGGACTACCTCCATCTAATAACGAAGAAGCAAAGAAGACAACGACCAAGCTCGCTGATTTGGAGATAGAGGTGAAGATAATTGGTTGGGATGCGATGATAAGAATCCAATGCAGCAAGAAGAACCACCCTGCAGCAAGGTTGATGGCAGCATTGAAGGACCTGGACTTGGAAGTGCATCACGCAAGCGTGTCCGTGGTGAATGATTTAATGATCCAACAAGCCACGGTGAACATGGGAAACAAGTTTTACACGCAGGAGCAGCTTCTGTCGGCACTCTCGTCCAAAGTTGGCGATGAACAACGATAG 1914 0.5381 MTEYRMNLWTDDNSSVMEAFMSSSDLSSLWLPTPQSAASTTTPGLETTRAPPPQSHSLLNQETLQQRLQTLIEGARESWTYAIFWQSSYDYSSGTSLLGWGDGYYKGEEDKVKAKGKTPKTTSSAEQDHRKKVLRELNSLISGPSASVDDVDEEVTDTEWFFLVSMTQSFVNGSGLPGQAFFNSSPVWVAGPDRLSESVCERAHQGQMFGLQTLVCIPSANGVVELASTEVIFQNPDLMNKVRDLFNFNNNPETGSWALNCVATTDQGENDPSSLWLNPEIRDSSTVAPPNSTVNKTLQFETPGSSTLTDTPSAAAVHVPKSNGQGFFSRELNFSNSLKPESGEILSFGESKKSSYNGSFFPGVVAIEENNKKRSPVSRSSIDDGMLSFTSLPAANIKSGSGGAGAGGGDSDHSDLEASMVKQADSRVMEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKLKLNGLDSEKGELEKQLDSAKKELELATKNPPPPPPPPPGLPPSNNEEAKKTTTKLADLEIEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLDLEVHHASVSVVNDLMIQQATVNMGNKFYTQEQLLSALSSKVGDEQR* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0809 637 PANTHER TRANSCRIPTION FACTOR MYC2 9 633 - -
Gso1g0809 637 SMART finulus 453 502 IPR011598 GO:0046983
Gso1g0809 637 CDD bHLH_AtAIB_like 444 520 - -
Gso1g0809 637 Pfam Helix-loop-helix DNA-binding domain 451 496 IPR011598 GO:0046983
Gso1g0809 637 MobiDBLite consensus disorder prediction 32 56 - -
Gso1g0809 637 MobiDBLite consensus disorder prediction 525 541 - -
Gso1g0809 637 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 447 496 IPR011598 GO:0046983
Gso1g0809 637 MobiDBLite consensus disorder prediction 421 457 - -
Gso1g0809 637 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 450 516 IPR036638 GO:0046983
Gso1g0809 637 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 64 246 IPR025610 -
Gso1g0809 637 Gene3D - 439 526 IPR036638 GO:0046983
Gso1g0809 637 Coils Coil 493 527 - -
Gso1g0809 637 PANTHER MYC 9 633 IPR045084 GO:0003700|GO:0006355
Gso1g0809 637 MobiDBLite consensus disorder prediction 523 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0809 Gso-Chr1 31275515 31278026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0809 1 633 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.410 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g0809 bHLH-MYC_N 4.2e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0809 K13422 - gmx:100790854 1204.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0809 1 31275515 31278026 Gso1g0809 1 31275515 31278026 ECH
Gso1g0809 1 31275515 31278026 Gso9g1686 9 41263562 41266134 GST