Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0804 ATGACTACTACTGAGCATGTTACGGCTTTTGATAGAGCAAGTTATTTCAGACCTTGTAATCCATCCTTCCTCGTTGTCATCTATCCATCAAACGCCCGTTCACGAGGTCCTTTGAATTTTCCATCTAAGTTTTGTAAGAAACACATTGATTTGCGCAAGAACAGAGGAGATATCAATCTTGAGGTGTTAAACGGGAGAGTTTGGCATGCAAGATACCGAATAAGGACAGCCGAAACTAGAAGAAGATTTGAACTGTCAAGTGGATGGAAGACATTTGCCGAGGACAATAACTTGAAAGTTGGTGATGTTTGCACCTTTGAGCTCATTCCTGCAACAAAACTCACCTTCCAGACTCTCGTCAAATATAGCAGTTTATCAAAGACCGAGAAAAGAAATGAAAATCGTCACTACTACCAACTCGTCACCCTCAAAGAGTTTCAGTTCTTTTGTATCAAACTTTACGTCGGGTATAATTAA 477 0.4004 MTTTEHVTAFDRASYFRPCNPSFLVVIYPSNARSRGPLNFPSKFCKKHIDLRKNRGDINLEVLNGRVWHARYRIRTAETRRRFELSSGWKTFAEDNNLKVGDVCTFELIPATKLTFQTLVKYSSLSKTEKRNENRHYYQLVTLKEFQFFCIKLYVGYN* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0804 158 SMART B3_2 23 122 IPR003340 GO:0003677
Gso1g0804 158 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 119 - -
Gso1g0804 158 PANTHER B3 DOMAIN-CONTAINING 4 119 - -
Gso1g0804 158 SUPERFAMILY DNA-binding pseudobarrel domain 18 120 IPR015300 -
Gso1g0804 158 CDD B3_DNA 21 112 IPR003340 GO:0003677
Gso1g0804 158 Pfam B3 DNA binding domain 23 114 IPR003340 GO:0003677
Gso1g0804 158 ProSiteProfiles B3 DNA-binding domain profile. 23 124 IPR003340 GO:0003677
Gso1g0804 158 Gene3D - 1 122 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0804 Gso-Chr1 30426926 30427892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0804 1 109 REM Transcription Factor Family AT1G49480 34.862 3.68e-10 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso1g0804 B3 6.5e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0804 - - gmx:100779136 322.398