Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0803 ATGGATTTCGCTCGGGACGGCAACGTGGTGCAAATAATCACCGGCGGTGGAGGCGGAGGCGGAGGCGGAGAGAGCTGGTCCGGCGACCAAGCCGATTGGGCGACGGAGGACGAGTACCGGTTCTGGAACAACAACAACAGCGGTGGGGACTCAGAAACGACGCCGTCGAACTCGAATTACGAGGGGCGGTCGTCGGAGCCGCCGAGCAAAAAGTCGCGGAATTCCTCGCAGGAAGGGAGCTCCTCGAACCGGTCGAAGGCGATCGGGAAGATGTTCTTCAAGACGAAGCTGTGCTGCAAGTTCAGGGCGGGGACCTGCCCTTACATCACCAACTGCAACTTCGCCCACAGCATCGAGGAGCTGCGGCGCCCGCCGCCCAATTGGCAGGAGATCGTGGCGGCCCACGAGGAGGAGAAGGCGGTGATGATCGAGCCGCCGAGGGAGGAGTTTCAGATTCCCACAGTGGGGTCTACCACCTTCTCAGGGGAAATGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACGGAGGAAGGGTGCCCCTATGGAGATAGTTGCACCTTTCTTCACGATGAGCAATCGAAGAATCGCGAGAGTGTTGCTATAAGTTTGGGCCCTGGTGGTTACGGTGGCGGCGGCGGCGGCGGCGGCGGTGTTGGTGGTGGTGCCAGTGGTGGTAATGGTGGTGCTAATGCTGCTGGGAATGGGCCTAATTCGAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAGTGGGAGATGACAGGGTATTGCCCCTTTGGCAATAAGTGTCATTTTGCTCATGGTGCCACAGAATTGCACAGATATGGAGGCGGGCTTATGGAGGGAGAAAATAGAGATGCTGCTTCTGCAGTTGCTGGTGACACAAATAAGGGAGTGCCTTCAAAAGCTTCTGCCGATAATGTGGTTGCAGCAGTTACTCTTGTCGCTCATTCTGATGTGTATCATATTGGAGTCCCTTCACAAAGGCCTTCTTCCATGGTGATTCAGAGGCCAGGACAGAGAGCACATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATCGAATAG 1107 0.5474 MDFARDGNVVQIITGGGGGGGGGESWSGDQADWATEDEYRFWNNNNSGGDSETTPSNSNYEGRSSEPPSKKSRNSSQEGSSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMIEPPREEFQIPTVGSTTFSGEMMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGVGGGASGGNGGANAAGNGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGENRDAASAVAGDTNKGVPSKASADNVVAAVTLVAHSDVYHIGVPSQRPSSMVIQRPGQRAHQKWKGPDKISRIYGDWIDDIE* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0803 368 MobiDBLite consensus disorder prediction 39 84 - -
Gso1g0803 368 MobiDBLite consensus disorder prediction 37 84 - -
Gso1g0803 368 SUPERFAMILY CCCH zinc finger 90 123 IPR036855 GO:0046872
Gso1g0803 368 PANTHER CCCH ZINC FINGER/TIS11-RELATED 15 365 IPR045877 GO:0003729
Gso1g0803 368 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Gso1g0803 368 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 247 272 IPR000571 GO:0046872
Gso1g0803 368 Gene3D - 161 207 - -
Gso1g0803 368 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 15 365 - -
Gso1g0803 368 SUPERFAMILY CCCH zinc finger 244 277 IPR036855 GO:0046872
Gso1g0803 368 SMART c3hfinal6 168 195 IPR000571 GO:0046872
Gso1g0803 368 SMART c3hfinal6 246 273 IPR000571 GO:0046872
Gso1g0803 368 SMART c3hfinal6 92 118 IPR000571 GO:0046872
Gso1g0803 368 Gene3D - 87 123 - -
Gso1g0803 368 Gene3D - 240 278 - -
Gso1g0803 368 ProSiteProfiles Zinc finger C3H1-type profile. 246 274 IPR000571 GO:0046872
Gso1g0803 368 ProSiteProfiles Zinc finger C3H1-type profile. 168 196 IPR000571 GO:0046872
Gso1g0803 368 SUPERFAMILY CCCH zinc finger 167 196 IPR036855 GO:0046872
Gso1g0803 368 ProSiteProfiles Zinc finger C3H1-type profile. 92 119 IPR000571 GO:0046872
Gso1g0803 368 Pfam CCCH-type zinc finger 172 194 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0803 Gso-Chr1 29855144 29858903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0803 248 276 C3H Transcription Factor Family AT1G68200 62.069 3.52e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso1g0803 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0803 - - gmx:100788208 689.493