Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0799 ATGGCTTTGGAAACTCTTGCTTCCAATGAGTTCTCCAACTTCATTATCTATGACACTATCTCTGCAACTCCATTTAGCAGCCATGGCTCTCCGGAGGCTAGTTTCTTGGAAAGTTTAGTGAACTATCAGGAGCATGACCCTGCATTTGATAACAGCGCATTGAGGACCCGAAATCACCAAGCCGGCGAACAAGAAAGCGTTGGCAGGAGGCAGAATGTGGTGGGGGTGCAAGTGCAAGGGAGGAAGAAGAGGAGAAGGAAACCAAGGGTTTGCAAAAACAAGGAAGAGGCTGAGACACAAAGAATCACCCACATTACAGTGGAAAGAAACCGCCGGAAGCAGATGAATGAACACCTTGTTGTCCTTCGTTCACTCATGCCTGAGTCCTACGTTCAAAGGGGTGACCAGGCCTCTATAGTTGGTGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCACCTCTTGCAATCACTTGAAGCTAGAAAGTTGCAACTTTTACATCAAGAAGTTGTACAAGCCAATGAAAATACGGCCATTTCCAAACTCATGCAACCCCCTTTTGCACAATTTTTTTCGTATCCTCAGTACACATGGTCGCAGACTCCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTTACTTTAATCGAGACCCATGCAAATCTTCGGATTCTCACTAGGAGAAACAGCCCCGGGCAGCTAACAAAGTTAGTAGCTGGTTTTCAAACACTGTGCCTCACCGTCCTACATCTTAATGTCACCACTATAGACCCTTTGGTATTCTATTCCATCAGTGCTAAGGTTGAAGAAGGATTCCAACTTTGTTCAGTAGATGGTATTGCAACGGCAATTCATCATTTGCTTGCTAGAATCGAAGAAGAGGCTTCCCTTTGCTCTTGA 912 0.455 MALETLASNEFSNFIIYDTISATPFSSHGSPEASFLESLVNYQEHDPAFDNSALRTRNHQAGEQESVGRRQNVVGVQVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLVVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLLHQEVVQANENTAISKLMQPPFAQFFSYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRRNSPGQLTKLVAGFQTLCLTVLHLNVTTIDPLVFYSISAKVEEGFQLCSVDGIATAIHHLLARIEEEASLCS* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0799 303 CDD bHLH_AtFAMA_like 102 161 - -
Gso1g0799 303 SMART finulus 105 156 IPR011598 GO:0046983
Gso1g0799 303 Gene3D - 91 168 IPR036638 GO:0046983
Gso1g0799 303 Pfam Helix-loop-helix DNA-binding domain 100 151 IPR011598 GO:0046983
Gso1g0799 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 167 IPR036638 GO:0046983
Gso1g0799 303 MobiDBLite consensus disorder prediction 59 73 - -
Gso1g0799 303 PANTHER TRANSCRIPTION FACTOR BHLH71 1 302 - -
Gso1g0799 303 Coils Coil 147 167 - -
Gso1g0799 303 PANTHER MAX DIMERIZATION, MAD 1 302 - -
Gso1g0799 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 150 IPR011598 GO:0046983
Gso1g0799 303 MobiDBLite consensus disorder prediction 59 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0799 Gso-Chr1 29637521 29639779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0799 91 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 55.191 2.55e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g0799 HLH 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0799 - - gmx:100783542 555.829