Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0784 ATGGAGAAAGATCACAACTATTCGGCACCACCACCATCCATGCCTCCAATCTTCAACACATTAGACTACTCTCTAGACCAACATCATTTGTATGCACCAAATCAACACCAACAACACCTGATGAAGTTCCAAGGTTCCGGTGATGAAAACAACAATGGATCAATGGTGGATTACATGCCTCAAACAACACCCCCACATGGCTTTTATGGTGCTACTAGTGCCGCCACAACATCCTATGACAAACTGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCAAAGTTAGCTTTGAACCAAGCAAAAAACTGTGAAGAGTCTGCAATAGACCCGGTTTATTTTCTCAAGTTTCCCGTGTTAAACAACAAGATGGAGGAGGATCAGCAGAATATGATGATGAATAATGATGACCCTGATGGTGATGAAGCAGAAAATCATCATCATGATGAGAGGTTCAACAACTTGGTGAGTGTGGAAGACAAAGAGGGAATGATGGTGAGAGAGGATGAAGAGACTACACGGGTTTCCGACGACAACAACTCGGTGCAGATTCGGTTTCTTGGGCATGAAGAGCCTCAGCAGAAGAATAATTGTGCAGTGCAGGAGAACAAGAACGGCAAGAGGAAGAGGCCAAGAACTGTTAAGACAAGTGAGGAGGTTGAGAGCCAGCGCATGACTCACATAGCGGTTGAAAGGAACCGTAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCCATAATTGGGGGGGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAGTCACAAAAGAGGAGGAGGCTACTTGGAGAAGCTCAAGCAAGACAAGTTGGGGATCCATCTCTTGCAACACAACAACAGCCTCCATTCTTTCCACCTTTGCCTATTCCAAATGAGCAGATGAAGCTTGTGGAGATGGAGACCGGACTCCACGAAGAAACCGCGGAGAGCAAGTCTTGTTTGGCTGATGTTGAAGTGAAGCTTCTAGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGCTGATCAAGACCATTGCTGCTCTTGAAGATCTTCAGCTTATCATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTATATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGCTCCGTCCAGCAGATATTCAATTTTATTCATGCAAACACTAGCATGTGA 1290 0.4496 MEKDHNYSAPPPSMPPIFNTLDYSLDQHHLYAPNQHQQHLMKFQGSGDENNNGSMVDYMPQTTPPHGFYGATSAATTSYDKLSFADVMQFADFGPKLALNQAKNCEESAIDPVYFLKFPVLNNKMEEDQQNMMMNNDDPDGDEAENHHHDERFNNLVSVEDKEGMMVREDEETTRVSDDNNSVQIRFLGHEEPQQKNNCAVQENKNGKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGDPSLATQQQPPFFPPLPIPNEQMKLVEMETGLHEETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0784 429 PANTHER TRANSCRIPTION FACTOR FAMA 38 429 - -
Gso1g0784 429 MobiDBLite consensus disorder prediction 203 225 - -
Gso1g0784 429 Pfam Helix-loop-helix DNA-binding domain 224 275 IPR011598 GO:0046983
Gso1g0784 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 289 IPR036638 GO:0046983
Gso1g0784 429 Gene3D - 215 289 IPR036638 GO:0046983
Gso1g0784 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 223 274 IPR011598 GO:0046983
Gso1g0784 429 PANTHER TRANSCRIPTION FACTOR FAMA 38 429 IPR044283 GO:0003700|GO:0010052
Gso1g0784 429 MobiDBLite consensus disorder prediction 195 225 - -
Gso1g0784 429 CDD bHLH_AtFAMA_like 226 293 - -
Gso1g0784 429 CDD ACT_UUR-ACR-like 355 419 - -
Gso1g0784 429 SMART finulus 229 280 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0784 Gso-Chr1 27627716 27631420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0784 46 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 58.454 8.54e-149 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g0784 HLH 9.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0784 - - gmx:100813515 815.068