Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0780 ATGTCGGCAGCGTCGCCGTCGCCGGCGACATCAACGGCTGCGCCACCGCTACAAACACCACCTTCTTCCAACAATACTAGTCCTTCACCGTCCACCGCTACCACTCCACCGTTGCAACAAACCCCTCCTTCCACTTCACCGCCACAACAACCGGCTTCTCCGCCGCCGTCGACCCCTTCTCCGGCGAATCCGCCGCCGTCATCACCACCTAGTTCTCCGCCTCCCCCCATGTCAGGAACCCCACCTCCTTTAGTACCTCCACCATCTCCACCGCCATCACCACCGCCGTCTACTCCGGCGGCGCAGCCAGCGGTGCCACCGAGCTCTCCACCGCCACCACCATCACCATCACCATCAGTTCCATCAAGCCCTCCACCATCAAACCCTCGTAACAACACATCTCCACCACCTTCACCACCACCACAACCACCAGCTCCACCACCTCAACCACCAGCTCCACCAGCTAACAACACTTCACCACCACCACAGCGAAATTCGCCACCCCCTCCAGCTGCCACGCCGCCCCGGACCTCCCCACCGCAAACTTCACCATCCCCTCCGGCTGCACCGCCTCCTAGAAACTCCACTAGGTTGCCGCCACCGGTTAATTCACCACCACCGCCGGTGGATGCACCTCCACCGAGGTCATCGTCGCCACCAGCACCAGCACCATCCACCCCTCCTTCTAGGACTAGTCCTCCTCCCACACCAAGTTCTCAACCAGCTCCACCTTCAAATTCTACACCAAGGTCATCACCTCCATCGCCACCTTCAATTACTAATTTGGCCCCATCCCCGCCATCACGAATTTTGTCATCGCCACCACCGCCACCGGCTCAGAATGGGACAGAAAACTCAAGCCCTGATGGAGGTGGAGATGGAATTGGCATTGGTGGTGTAGTGGCTATTAGTGTGGTGGCTGGATTTCTGCTGCTTGGCTTCATTGGTGTTCTTATATGGTGCATGAGGAGAAAAAAAAGAAAGGTGCTTGTGAGTGGTGATTATGTCATGCCATCCACTCTTGCCTCATCTCCTGAATCCGATTCATCCTTTTTTAAGACACACTCCTCAGCTCCTCTTGTACAAAGTGGCTCTGGCAGTGATGTTGTGTACACACCATCTGAACCTGGTGGACTAGGCCACTCAAGGTCATGGTTTTCATATGAAGAACTAATCAAGGCCACAAATGGTTTCTCAACTCAAAATCTTTTGGGTGAGGGTGGATTTGGATGTGTGTATAAAGGGTGCCTTCCTGATGGGAGAGAGATAGCAGTCAAACAGCTGAAGATTGGTGGAGGCCAGGGGGAGAGAGAATTCAAGGCTGAAGTGGAAATTATCAGTCGTATACATCATCGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGACAACAAAAGACTACTTGTCTATGACTATGTCCCTAACAATACCCTTTATTTTCATCTACATGGGGAAGGTCAGCCTGTATTAGAATGGGCTAACCGTGTGAAAATTGCAGCTGGTGCAGCCCGAGGACTAACTTATCTCCATGAAGACTGCAACCCTAGGATCATTCACAGGGATATCAAGTCATCAAACATTCTTTTAGATTTCAATTATGAAGCCAAGGTCTCTGATTTTGGGCTAGCCAAATTAGCTCTTGATGCAAATACACATATAACCACTCGTGTCATGGGAACTTTTGGGTATATGGCCCCTGAGTATGCGTCAAGTGGCAAATTGACTGAGAAGTCTGATGTATATTCTTTTGGAGTCGTGCTTTTGGAGCTAATTACCGGAAGGAAGCCAGTAGATGCATCCCAACCTTTGGGAGATGAGAGCTTAGTTGAATGGGCTCGACCTTTACTGAGTCATGCACTCGACACTGAGGAATTTGATAGTTTGGCAGATCCAAGGCTAGAAAAGAATTATGTTGAGAGTGAATTGTATTGCATGATTGAAGTTGCTGCTGCTTGTGTGCGGCATTCAGCTGCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGGAGGTTCTGATCTAACTAATGGAATGCGACTTGGGGAAAGCGAGGTGTTTGACGCACAGCAATCTGAAGAAATAAGATTATTTCGGAGGATGGCATTTGGTAATCAAGATTATAGCACAGACTTCTTTAGCCGTGCTAGTTTGAATCCATGA 2175 0.503 MSAASPSPATSTAAPPLQTPPSSNNTSPSPSTATTPPLQQTPPSTSPPQQPASPPPSTPSPANPPPSSPPSSPPPPMSGTPPPLVPPPSPPPSPPPSTPAAQPAVPPSSPPPPPSPSPSVPSSPPPSNPRNNTSPPPSPPPQPPAPPPQPPAPPANNTSPPPQRNSPPPPAATPPRTSPPQTSPSPPAAPPPRNSTRLPPPVNSPPPPVDAPPPRSSSPPAPAPSTPPSRTSPPPTPSSQPAPPSNSTPRSSPPSPPSITNLAPSPPSRILSSPPPPPAQNGTENSSPDGGGDGIGIGGVVAISVVAGFLLLGFIGVLIWCMRRKKRKVLVSGDYVMPSTLASSPESDSSFFKTHSSAPLVQSGSGSDVVYTPSEPGGLGHSRSWFSYEELIKATNGFSTQNLLGEGGFGCVYKGCLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIEDNKRLLVYDYVPNNTLYFHLHGEGQPVLEWANRVKIAAGAARGLTYLHEDCNPRIIHRDIKSSNILLDFNYEAKVSDFGLAKLALDANTHITTRVMGTFGYMAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLSHALDTEEFDSLADPRLEKNYVESELYCMIEVAAACVRHSAAKRPRMGQVVRAFDSLGGSDLTNGMRLGESEVFDAQQSEEIRLFRRMAFGNQDYSTDFFSRASLNP* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0780 724 SUPERFAMILY Protein kinase-like (PK-like) 379 669 IPR011009 -
Gso1g0780 724 Gene3D Phosphorylase Kinase; domain 1 378 473 - -
Gso1g0780 724 PANTHER BNACNNG34790D PROTEIN 102 719 - -
Gso1g0780 724 SMART serkin_6 398 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0780 724 ProSiteProfiles Protein kinase domain profile. 398 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0780 724 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 102 719 - -
Gso1g0780 724 ProSitePatterns Protein kinases ATP-binding region signature. 404 426 IPR017441 GO:0005524
Gso1g0780 724 MobiDBLite consensus disorder prediction 1 292 - -
Gso1g0780 724 MobiDBLite consensus disorder prediction 35 282 - -
Gso1g0780 724 CDD STKc_IRAK 404 674 - -
Gso1g0780 724 Pfam Protein tyrosine and serine/threonine kinase 400 669 IPR001245 GO:0004672|GO:0006468
Gso1g0780 724 Gene3D Transferase(Phosphotransferase) domain 1 474 682 - -
Gso1g0780 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 518 530 IPR008271 GO:0004672|GO:0006468
Gso1g0780 724 PRINTS Proline rich extensin signature 4 25 - -
Gso1g0780 724 PRINTS Proline rich extensin signature 26 42 - -
Gso1g0780 724 PRINTS Proline rich extensin signature 44 61 - -
Gso1g0780 724 PRINTS Proline rich extensin signature 65 90 - -
Gso1g0780 724 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0780 Gso-Chr1 27483949 27489439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0780 193 716 Trihelix Transcription Factor Family AT1G70460 50.269 6.86e-174 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso1g0780 PK_Tyr_Ser-Thr 9.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0780 - - gmx:100812440 904.82