Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0698 ATGGATTGTTTCTCATTCCTACCAACAATTTCTCATTTACTTAGTTTCTATTATTTAGGCAGAACCTCGAAGCGCCACCGCCACCGCCACCGAAGCAGAAAGTCCGACGAAGAAATTGAATGCGGTTGCGAAATTGCTCCGGCGGTTCCTTTTCCGACTCCGCCCCGTAATTCTGGCACGAATTTTCGCGTAATCGACGACGATGATGTCGAAGAAGGAGAAATTTTCGAAGACGACGACGATGTCGCGAAACAGCACGCGCAATCTGAAGCTGAGCCTGGCGAAATTGACCCGACCGGAGATCGAGGTGTTCGATCCGATAACAAAAATCTGGGACATTTTGCCAGGGAGACTTTGTTGCATGCTAAAGATATAGAAACTAAAACTCAGTGCAACGTTGATGATAGATTTATTAGTCCTGATGGAGAAGATGGGGCATGCTATCAGAGTCATGTTGGCCGTGGAATACATGAAGATGGTATGGGGAATGGTCTTTTTGATGGAAAGGATGGTAGAGCTAGTACAGATGGTATGGGCAATGGGCTTTTGGATCATAAACATGGATGTTTTAAAGGAAATGAGAAACTAAAAGGTTATTGTGATGATGAGGATGTGGAGGTTGATGGAGGGAAAGTTGGTTACTATAAAAATTCTTCCTCAGAAAGTGGAAGAGAGAAAGATAGAAGATCAAGATATTCACATTCTCGTGATAGATATAGAAGTCGATCAAGATCAACTGGTCATGCTACGGACAGGTCTCATTCTGGTAGTATAGTGGAAGAACATGCTCGTTCAAAGAGAAAGCACTCTGGTGAACAGGGGGATGATTCATATGCTAGTAGACTGAAGACTGACTATGACCTTGATGATGAAAGAATGATGGCAAGCAGAAGGGAGAGTAGAGATTTGGTGGTGGATAAAAGAAGGGAACACAGGACAAGTTATCATACTCAGGAGGCTTGGGGTAGGGCTAGGAGTAGCGATAGAGATGTTGATAGAGACTTAAAGATGGAAAAAGAACAAGAGAGGAGTAGGAATAGGGAGGTCAATTGGGTGCATAGAAGGGAAAAAGAACGTGAGAGGAGTTGTGAGAGGCACAGAAGGGATGTAGAAAAAGATAGGAGGGAAAGAGAGGATGATAGGGATAGGAGAAGAGAAAAGGAAAGCGATAGGATCCGTGAGACAGTGTTTGAGAGGGATAGGAGAAGGGATAAGGAAAAAGATCAAAGTAGAGACAGAACAAGGGGTGATGAGAGGGTCAGAGACCAGGAGACTGCTGAACATAATGATAGGAGTTGGAAAAGGGATAAAATTAAGGAGAGGGAGAAGCGAGATGATATAAAGAGGCACAAGGATAGAGGCAATGGCATGGGTAAGTATCTGTCTCATGAGGATGATTATTATGATGCTCATGATAGATATAGAAGGCGTTTGAAACAAGAAGAAAGAGAGTGCCACCAAGAAAGAAAAAGAAAATCCTCGCACGTAAAGGTTTATAATTCTATGGGCAGTACCCTGATAGATGATGCAAACAAACTAGAGAGAGGGGAGGATGAACAAGATGACTTAGATGAGAAGGTTACATTGCAATTACCTGATCAAGAAGAGGAAGATTTCAATAGGGTTAAAGAGGAGAGTAGAAGGAGAAGGGAGGCAATCTTAGAGAAATACAAGAAGCAGCATCAACAAATAGAACTAAATACAGAAAATGAAGGAAAAGACAGACAAGCTGTGGAGATTCCTCCTAGCATTCCTGATGCTCTTGATGGTAAGAGTGATGGTGTTGATGATGTGGAAGTTGAAACATTATTCTCAGTCAGGAAATCTCCTGCGGAAAATGGGAATGTTGCTTCTGATAAGATCTCTAGTGCTGGTGGCCTTGGAGAGGGCTCTCCTAAGAGTGAGAGATCAGATGACAAGTTTTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCAGAAATCAGGTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACAGTTACCATTTCGGTGAAGTACTTTATGGCCGATATGAAGTCATTGCAGCTCATGGGAGGGGTGTCTTTTCAGCAGTGGTCCGGGCAAAAGATCTTAAAAATAGTAATGGTGAGCCCAGAGAAGTTGCCATAAAAATTATTCGTAGTAATGATACAATGTACAAGGCTGGTATGGATGAGTTAGTCATATTAAAGAAATTAGTAGGTGCTGATCCGGATGATAAGTGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAGTACAAGAATCACCTTTGTTTAGTTTTTGAATCTCTCCATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACTGCAGTTAGGGCGTATGCTAAACAACTTTTTATTGCACTTAAGCATCTCCGGAACTGTGGTGTTCTCCATTGTGATATAAAGCCAGATAATATGTTGGTTGAAGAGGCAAAAAATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATCATACTTGGCTTACCCTATGATCATCCGTTGGATATGTGGTCTGTAGGATGTTGTTTGTATGAACTCTATACAGGGAAAGTTCTTTTTCCAGGTTTTACTAACAATGACATGCTATGGCTCCACATGGAATTGAAGGGTATTTTTCCGAAAAAGATGCTTCGTAAGGGAGCATTTATTGAACAACATTTTGATCAGTACCTGAATTTTCTTGCTACAGAGGAGGACCCTGTGACGAAAAAGGCTATAAAGCGGATGATTGTAAACATAAAGCCAAAAGATATTGGAACAATCATCAGTGGCTCTCCAGGGGAGGATCCAAAGATGTTAACCAATTTTAAGGATCTTATGGAAAAAGTTTTTATATTGGATCCAGACAAGAGGTTGACAGTCTCACAGGCATTGAATCACCCATTCATCACTGGCAAGGGAACAATGTTGCTGATTTTGACTCCCACAATGATGTTCACTGATATTTGTACATAG 3087 0.4146 MDCFSFLPTISHLLSFYYLGRTSKRHRHRHRSRKSDEEIECGCEIAPAVPFPTPPRNSGTNFRVIDDDDVEEGEIFEDDDDVAKQHAQSEAEPGEIDPTGDRGVRSDNKNLGHFARETLLHAKDIETKTQCNVDDRFISPDGEDGACYQSHVGRGIHEDGMGNGLFDGKDGRASTDGMGNGLLDHKHGCFKGNEKLKGYCDDEDVEVDGGKVGYYKNSSSESGREKDRRSRYSHSRDRYRSRSRSTGHATDRSHSGSIVEEHARSKRKHSGEQGDDSYASRLKTDYDLDDERMMASRRESRDLVVDKRREHRTSYHTQEAWGRARSSDRDVDRDLKMEKEQERSRNREVNWVHRREKERERSCERHRRDVEKDRREREDDRDRRREKESDRIRETVFERDRRRDKEKDQSRDRTRGDERVRDQETAEHNDRSWKRDKIKEREKRDDIKRHKDRGNGMGKYLSHEDDYYDAHDRYRRRLKQEERECHQERKRKSSHVKVYNSMGSTLIDDANKLERGEDEQDDLDEKVTLQLPDQEEEDFNRVKEESRRRREAILEKYKKQHQQIELNTENEGKDRQAVEIPPSIPDALDGKSDGVDDVEVETLFSVRKSPAENGNVASDKISSAGGLGEGSPKSERSDDKFCDDIFGETPTGVQKSGKGEGLRIERGGLHDNWDDAEGYYSYHFGEVLYGRYEVIAAHGRGVFSAVVRAKDLKNSNGEPREVAIKIIRSNDTMYKAGMDELVILKKLVGADPDDKCHCVRFLSSFKYKNHLCLVFESLHMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVEEAKNTFKFCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLPYDHPLDMWSVGCCLYELYTGKVLFPGFTNNDMLWLHMELKGIFPKKMLRKGAFIEQHFDQYLNFLATEEDPVTKKAIKRMIVNIKPKDIGTIISGSPGEDPKMLTNFKDLMEKVFILDPDKRLTVSQALNHPFITGKGTMLLILTPTMMFTDICT* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0698 1028 Pfam Protein kinase domain 693 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0698 1028 MobiDBLite consensus disorder prediction 611 641 - -
Gso1g0698 1028 Coils Coil 464 491 - -
Gso1g0698 1028 PANTHER DUAL SPECIFICITY PROTEIN KINASE 355 1010 - -
Gso1g0698 1028 MobiDBLite consensus disorder prediction 220 464 - -
Gso1g0698 1028 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 355 1010 - -
Gso1g0698 1028 MobiDBLite consensus disorder prediction 210 464 - -
Gso1g0698 1028 MobiDBLite consensus disorder prediction 478 547 - -
Gso1g0698 1028 MobiDBLite consensus disorder prediction 525 547 - -
Gso1g0698 1028 CDD STKc_PRP4 691 1007 IPR044092 GO:0004674|GO:0006468|GO:0045292
Gso1g0698 1028 Gene3D Phosphorylase Kinase; domain 1 663 751 - -
Gso1g0698 1028 MobiDBLite consensus disorder prediction 478 495 - -
Gso1g0698 1028 Gene3D Transferase(Phosphotransferase) domain 1 752 1008 - -
Gso1g0698 1028 SMART serkin_6 692 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0698 1028 ProSiteProfiles Protein kinase domain profile. 692 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0698 1028 SUPERFAMILY Protein kinase-like (PK-like) 679 1020 IPR011009 -
Gso1g0698 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Gso1g0698 1028 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0698 Gso-Chr1 23383757 23393634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0698 691 1013 Core Cell Cycle Gene Families AT3G48750 28.012 5.05e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Gso1g0698 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0698 K08827 - gmx:100814081 1545.41