Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0677 ATGTCGAATTTGTATGGAGATTATCACCAAAAGATTGATTACGTGTTCAAGGTGGTGTTGATTGGGGACTCTGCAGTTGGAAAAACTCAATTGCTTGCACGCTTTGCTAGGAACGAATTCAGCCTCGATTCCAAGGCAACCATTGGAGTAGAGTTTCAGACTAAAACTCTCATCATTGATAACAAGACCATCAAGGCTCAGATATGGGACACCGCTGGCCAAGAAAGGTATAGGGCAGTTACAAGTGCATACTATAGAGGTGCTGTAGGGGCAATGTTAGTGTATGACATGACTAAGCGCCAATCGTTTGACCACATGGTAAGGTGGTTGGAAGAGTTGCGAGGCCACGCTGACCAAAACATAGTGATCATGCTAATTGGGAACAAGTGTGATTTGGGGAGCCTTAGAGCAGTGCCAATGGAAGATGCAGAGGAGGTTGCACAAAGAGAGAACCTTTTCTTTATGGAGACATCAGCACTTGAGTCCACTAATGTTGAAACTTGCTTTTTGACTATTCTAACTGAGATATACCGGATTCATGCCAAGAAATCACTCACTGCTAGTGACGATGATAATTGGGGTTCAGGGCTTCTCAAGGGAAGCAGGATAATTGTTCCCAACCAAGAGATAGATAATGGTGGGAAAAAGGGTGGTTGTTGTTTTGCCTCCTAG 672 0.4405 MSNLYGDYHQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSLDSKATIGVEFQTKTLIIDNKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMVRWLEELRGHADQNIVIMLIGNKCDLGSLRAVPMEDAEEVAQRENLFFMETSALESTNVETCFLTILTEIYRIHAKKSLTASDDDNWGSGLLKGSRIIVPNQEIDNGGKKGGCCFAS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0677 223 SMART arf_sub_2 1 181 - -
Gso1g0677 223 SMART ras_sub_4 13 179 - -
Gso1g0677 223 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 220 - -
Gso1g0677 223 ProSiteProfiles small GTPase Rab1 family profile. 11 220 - -
Gso1g0677 223 ProSiteProfiles small GTPase Ras family profile. 10 205 IPR001806 GO:0003924|GO:0005525
Gso1g0677 223 SMART rab_sub_5 16 179 - -
Gso1g0677 223 SMART rho_sub_3 18 175 IPR001806 GO:0003924|GO:0005525
Gso1g0677 223 CDD Rab11_like 13 177 - -
Gso1g0677 223 Pfam Ras family 17 177 IPR001806 GO:0003924|GO:0005525
Gso1g0677 223 ProSiteProfiles small GTPase Rho family profile. 9 181 - -
Gso1g0677 223 PANTHER - 1 220 - -
Gso1g0677 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 184 IPR027417 -
Gso1g0677 223 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Gso1g0677 223 Gene3D - 8 220 IPR027417 -
Gso1g0677 223 SMART ran_sub_2 21 213 - -
Gso1g0677 223 PRINTS Transforming protein P21 ras signature 16 37 - -
Gso1g0677 223 PRINTS Transforming protein P21 ras signature 39 55 - -
Gso1g0677 223 PRINTS Transforming protein P21 ras signature 57 79 - -
Gso1g0677 223 PRINTS Transforming protein P21 ras signature 119 132 - -
Gso1g0677 223 PRINTS Transforming protein P21 ras signature 154 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0677 Gso-Chr1 21495270 21497410 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0677 K07904 - gmx:100806396 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g0643 16 8286525 8287570 Gso1g0677 1 21495270 21497410 PCT
Gso3g0818 3 29737091 29738254 Gso1g0677 1 21495270 21497410 PCT