Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0675 ATGGATAGACACAAGTGCAAGCTTTGCTTCAGAAGCTTCGCCAATGGAAGAGCATTGGGGGGTCACATGAGGTCTCACATGATGAACCTTCCTATCTCAAAGCCCGAAGAATTAGCCTCATCGCGAACGATCCAACTCAGCTTCGAAGCTGAGTCAGCTTCATCATCGTCATCGTCTTCTTCAGACGAAGAGGATGAGGATGATGAAAAGACTCTATGTTATGATCTCAGAGAGAATCCCAAGCGAAGCATTCGCCTCGTGGATCCTGAATTTTCGTTCGCAACAGCAGCAGACACTGGCTCCGTGATCCTCCACGACAGAGAGAGCGAGTCCGAGTCATCAAAAAACAACCCAACTCGTAGAATATCCAAAAGGCCTTGGAATAATAATGACAATTATTATAATAATGATACCACCAACAGCAGCGTAAGAAAGAAAGGTCTCGGATTCGAACATGAATCCACAAAGAAGTGCAAGACAGAATCGTGGGTGGACCACGACCCTGCGAGCTCTGTCTCCGATGCCACCACCGAGGAAGACGTGGCATTTTGTCTCATGATGCTGTCGAGGGACAAATGGAAGCGACAGAGGGATCAAGATCAACCCTGCCGATTTGCGGAAAGGGAAAATCAATACGAGGTGGAGGATCAAGAAGAAGAAGATGATGAAGAAGACGAGGAAGACGAAGACGACGAAGAAGCCTTCGAGGAGAGCGAGGAGTCTCAAGAAACATCGAAACAGTGCAAGAACCGTGTACGAGGACGGTACAAATGCGACACCTGCAACAAGGTGTTCCGATCCTACCAAGCATTGGGGGGTCACCGAGCCAGTCACAAGAAGATCAAAGTGAACGGTGGTGGTAGAGAACAAGAACTTGAACACAACAAGAAGAAGAGTGGAACATGTGTTGTTGTGGAAAAGAAAACTCACGAGTGCCCCGTTTGTTTCAGAGTCTTTGCTTCGGGTCAAGCGCTTGGGGGACACAAGAGAACCCATGTTACTGGCTCAGCAGCAACTGCAGCTGCAATCGCAACAACACTTCCGTCAAGTTCCGCAAAGTTTGGAAACAGTTTCATAGATCTCAACCTCCCTGCTCCTATTGACGAAGACGATGCTAGCCAAATCGAGAACTCTGCTGTTTCCGATGCAGAATTCGTCAAAATCCATTAG 1170 0.4786 MDRHKCKLCFRSFANGRALGGHMRSHMMNLPISKPEELASSRTIQLSFEAESASSSSSSSSDEEDEDDEKTLCYDLRENPKRSIRLVDPEFSFATAADTGSVILHDRESESESSKNNPTRRISKRPWNNNDNYYNNDTTNSSVRKKGLGFEHESTKKCKTESWVDHDPASSVSDATTEEDVAFCLMMLSRDKWKRQRDQDQPCRFAERENQYEVEDQEEEDDEEDEEDEDDEEAFEESEESQETSKQCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNGGGREQELEHNKKKSGTCVVVEKKTHECPVCFRVFASGQALGGHKRTHVTGSAATAAAIATTLPSSSAKFGNSFIDLNLPAPIDEDDASQIENSAVSDAEFVKIH* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0675 389 Pfam C2H2-type zinc finger 3 27 - -
Gso1g0675 389 Pfam C2H2-type zinc finger 310 332 - -
Gso1g0675 389 Pfam C2H2-type zinc finger 255 280 - -
Gso1g0675 389 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gso1g0675 389 MobiDBLite consensus disorder prediction 196 211 - -
Gso1g0675 389 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 387 IPR044303 GO:0006355
Gso1g0675 389 MobiDBLite consensus disorder prediction 156 175 - -
Gso1g0675 389 Gene3D Classic Zinc Finger 253 332 - -
Gso1g0675 389 MobiDBLite consensus disorder prediction 212 239 - -
Gso1g0675 389 SUPERFAMILY beta-beta-alpha zinc fingers 255 332 IPR036236 -
Gso1g0675 389 ProSitePatterns Zinc finger C2H2 type domain signature. 312 332 IPR013087 -
Gso1g0675 389 MobiDBLite consensus disorder prediction 104 119 - -
Gso1g0675 389 MobiDBLite consensus disorder prediction 196 247 - -
Gso1g0675 389 ProSitePatterns Zinc finger C2H2 type domain signature. 258 278 IPR013087 -
Gso1g0675 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 310 337 IPR013087 -
Gso1g0675 389 MobiDBLite consensus disorder prediction 120 145 - -
Gso1g0675 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gso1g0675 389 SMART c2h2final6 4 26 IPR013087 -
Gso1g0675 389 SMART c2h2final6 310 332 IPR013087 -
Gso1g0675 389 SMART c2h2final6 256 278 IPR013087 -
Gso1g0675 389 MobiDBLite consensus disorder prediction 104 149 - -
Gso1g0675 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 283 IPR013087 -
Gso1g0675 389 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 387 - -
Gso1g0675 389 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0675 Gso-Chr1 21242166 21243867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0675 1 375 C2H2 Transcription Factor Family AT3G60580 41.379 2.50e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso1g0675 zf-C2H2_6 3.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0675 - - gmx:100799313 686.797