Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso1g0675 | ATGGATAGACACAAGTGCAAGCTTTGCTTCAGAAGCTTCGCCAATGGAAGAGCATTGGGGGGTCACATGAGGTCTCACATGATGAACCTTCCTATCTCAAAGCCCGAAGAATTAGCCTCATCGCGAACGATCCAACTCAGCTTCGAAGCTGAGTCAGCTTCATCATCGTCATCGTCTTCTTCAGACGAAGAGGATGAGGATGATGAAAAGACTCTATGTTATGATCTCAGAGAGAATCCCAAGCGAAGCATTCGCCTCGTGGATCCTGAATTTTCGTTCGCAACAGCAGCAGACACTGGCTCCGTGATCCTCCACGACAGAGAGAGCGAGTCCGAGTCATCAAAAAACAACCCAACTCGTAGAATATCCAAAAGGCCTTGGAATAATAATGACAATTATTATAATAATGATACCACCAACAGCAGCGTAAGAAAGAAAGGTCTCGGATTCGAACATGAATCCACAAAGAAGTGCAAGACAGAATCGTGGGTGGACCACGACCCTGCGAGCTCTGTCTCCGATGCCACCACCGAGGAAGACGTGGCATTTTGTCTCATGATGCTGTCGAGGGACAAATGGAAGCGACAGAGGGATCAAGATCAACCCTGCCGATTTGCGGAAAGGGAAAATCAATACGAGGTGGAGGATCAAGAAGAAGAAGATGATGAAGAAGACGAGGAAGACGAAGACGACGAAGAAGCCTTCGAGGAGAGCGAGGAGTCTCAAGAAACATCGAAACAGTGCAAGAACCGTGTACGAGGACGGTACAAATGCGACACCTGCAACAAGGTGTTCCGATCCTACCAAGCATTGGGGGGTCACCGAGCCAGTCACAAGAAGATCAAAGTGAACGGTGGTGGTAGAGAACAAGAACTTGAACACAACAAGAAGAAGAGTGGAACATGTGTTGTTGTGGAAAAGAAAACTCACGAGTGCCCCGTTTGTTTCAGAGTCTTTGCTTCGGGTCAAGCGCTTGGGGGACACAAGAGAACCCATGTTACTGGCTCAGCAGCAACTGCAGCTGCAATCGCAACAACACTTCCGTCAAGTTCCGCAAAGTTTGGAAACAGTTTCATAGATCTCAACCTCCCTGCTCCTATTGACGAAGACGATGCTAGCCAAATCGAGAACTCTGCTGTTTCCGATGCAGAATTCGTCAAAATCCATTAG | 1170 | 0.4786 | MDRHKCKLCFRSFANGRALGGHMRSHMMNLPISKPEELASSRTIQLSFEAESASSSSSSSSDEEDEDDEKTLCYDLRENPKRSIRLVDPEFSFATAADTGSVILHDRESESESSKNNPTRRISKRPWNNNDNYYNNDTTNSSVRKKGLGFEHESTKKCKTESWVDHDPASSVSDATTEEDVAFCLMMLSRDKWKRQRDQDQPCRFAERENQYEVEDQEEEDDEEDEEDEDDEEAFEESEESQETSKQCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNGGGREQELEHNKKKSGTCVVVEKKTHECPVCFRVFASGQALGGHKRTHVTGSAATAAAIATTLPSSSAKFGNSFIDLNLPAPIDEDDASQIENSAVSDAEFVKIH* | 390 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso1g0675 | 389 | Pfam | C2H2-type zinc finger | 3 | 27 | - | - | |
Gso1g0675 | 389 | Pfam | C2H2-type zinc finger | 310 | 332 | - | - | |
Gso1g0675 | 389 | Pfam | C2H2-type zinc finger | 255 | 280 | - | - | |
Gso1g0675 | 389 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
Gso1g0675 | 389 | MobiDBLite | consensus disorder prediction | 196 | 211 | - | - | |
Gso1g0675 | 389 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 387 | IPR044303 | GO:0006355 | |
Gso1g0675 | 389 | MobiDBLite | consensus disorder prediction | 156 | 175 | - | - | |
Gso1g0675 | 389 | Gene3D | Classic Zinc Finger | 253 | 332 | - | - | |
Gso1g0675 | 389 | MobiDBLite | consensus disorder prediction | 212 | 239 | - | - | |
Gso1g0675 | 389 | SUPERFAMILY | beta-beta-alpha zinc fingers | 255 | 332 | IPR036236 | - | |
Gso1g0675 | 389 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 312 | 332 | IPR013087 | - | |
Gso1g0675 | 389 | MobiDBLite | consensus disorder prediction | 104 | 119 | - | - | |
Gso1g0675 | 389 | MobiDBLite | consensus disorder prediction | 196 | 247 | - | - | |
Gso1g0675 | 389 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 258 | 278 | IPR013087 | - | |
Gso1g0675 | 389 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 310 | 337 | IPR013087 | - | |
Gso1g0675 | 389 | MobiDBLite | consensus disorder prediction | 120 | 145 | - | - | |
Gso1g0675 | 389 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - | |
Gso1g0675 | 389 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
Gso1g0675 | 389 | SMART | c2h2final6 | 310 | 332 | IPR013087 | - | |
Gso1g0675 | 389 | SMART | c2h2final6 | 256 | 278 | IPR013087 | - | |
Gso1g0675 | 389 | MobiDBLite | consensus disorder prediction | 104 | 149 | - | - | |
Gso1g0675 | 389 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 256 | 283 | IPR013087 | - | |
Gso1g0675 | 389 | PANTHER | CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR | 1 | 387 | - | - | |
Gso1g0675 | 389 | MobiDBLite | consensus disorder prediction | 47 | 69 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso1g0675 | Gso-Chr1 | 21242166 | 21243867 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso1g0675 | 1 | 375 | C2H2 Transcription Factor Family | AT3G60580 | 41.379 | 2.50e-66 | 210 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gso1g0675 | zf-C2H2_6 | 3.1e-13 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso1g0675 | - | - | gmx:100799313 | 686.797 |