Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0643 ATGAGCCAGTGTGTTCCCAGTTGGGATGTCGAAGACAACCCACCACCCTCAAGAGTCTCACTTCGCTCCAACTCTAATTCAACTGCCCCTGATGTTCCCATGTTGGACTACGAGGTTGCTGAGCTGACATGGGAAAATGGGCAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTAAAACCCCCAACAGCCGTCACGAATAAGTACACATGGGAGAAGCCTCGCGCAAGTGGCACCTTGGAGTCCATAGTGAACCAAGTCACGAGCTTTCCTCACCGAGGAAAGCCGACACCATTAAACGGCGGTGGGGGCGGCGGCGTTTACGGGAACTTCAGGGTGCCGTGGTTCGACCCTCATGCCACTGCCACCACCACGAACACCGTGACGATGGACGCATTGGTGCCCTGCTCGAACCGGGAGCAGAGCAAGCAGGGCATGGAGTCGGTCCCCGGCGGCACGTGCATGGTGGGGTGCTCCACGCGTGTGGGGTCATGCTGCGGGGGGAAGGGGGCGAAGGGGCATGAGGCGACTGGGAGGGATCAGAGCGTGAGTGGGAGTGCCACGTTTGGGAGGGATAGCAAGCACGTGACCCTAGACACGTGCGACAGGGAGTTTGGCGTGGGTTTCACTTCCACCTCCATCAACTCGCTCGAAAACACCAGCTCCGCTAAGCACTGCACCAAGACCACCACCGTAGACGACCACGATTCTGTTTCCCACAGTAAACCAGTGGGAGAAGACCAGGATGAAGGGAAGAAAAAGAGAGCAAACGGAAAATCATCGGTGTCCACTAAAAGGAGCAGAGCTGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGAGTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATTTGAAGCAGTTGCAAGCACAGTTGCAGATGATAAATAGAATCAACATGTCATCGATGATGCTGCCATTGACCATGCAGCAACAGCTTCAAATGTCGATGATGTCTCCAATGGGCATGGGATTAGGGATGGGTATGGGGATGGGTATGGGAATGGGGATGGATATGAACTCCATGAACCGTGCTCACATCCCTGGCATCCCTCCAGTCCTCCACCCTTCTGCCTTCATGCCCATGGCAGCCTCGTGGGATGCCGCGGCCGCAGCTGGTGGCGGCGACCGACTTCAAGGGACTCCGGCCAACGTGATGCCTGACCCCTTGTCGACATTTTTTGGATGCCAATCACAGCCCATGACCATCGATGCCTACAGTAGACTTGCTGCCATGTATCAACAACTGCACCAACCTCCTCCTGCTTCTGGTTCCAAGAACTGA 1377 0.5439 MSQCVPSWDVEDNPPPSRVSLRSNSNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKPPTAVTNKYTWEKPRASGTLESIVNQVTSFPHRGKPTPLNGGGGGGVYGNFRVPWFDPHATATTTNTVTMDALVPCSNREQSKQGMESVPGGTCMVGCSTRVGSCCGGKGAKGHEATGRDQSVSGSATFGRDSKHVTLDTCDREFGVGFTSTSINSLENTSSAKHCTKTTTVDDHDSVSHSKPVGEDQDEGKKKRANGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKSDKASMLDEVIEYLKQLQAQLQMINRINMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGMDMNSMNRAHIPGIPPVLHPSAFMPMAASWDAAAAAGGGDRLQGTPANVMPDPLSTFFGCQSQPMTIDAYSRLAAMYQQLHQPPPASGSKN* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0643 458 MobiDBLite consensus disorder prediction 230 259 - -
Gso1g0643 458 PANTHER TRANSCRIPTION FACTOR UNE10 1 458 - -
Gso1g0643 458 SMART finulus 276 325 IPR011598 GO:0046983
Gso1g0643 458 MobiDBLite consensus disorder prediction 230 286 - -
Gso1g0643 458 MobiDBLite consensus disorder prediction 17 31 - -
Gso1g0643 458 MobiDBLite consensus disorder prediction 171 194 - -
Gso1g0643 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Gso1g0643 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 331 IPR036638 GO:0046983
Gso1g0643 458 CDD bHLH_AtPIF_like 270 331 - -
Gso1g0643 458 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 458 IPR031066 -
Gso1g0643 458 Coils Coil 276 296 - -
Gso1g0643 458 Gene3D - 265 330 IPR036638 GO:0046983
Gso1g0643 458 Pfam Helix-loop-helix DNA-binding domain 275 320 IPR011598 GO:0046983
Gso1g0643 458 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0643 Gso-Chr1 18002533 18008576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0643 1 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 50.450 1.92e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g0643 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0643 - - gmx:100798775 818.15