Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0635 ATGTTGGATTATGAGTGGGGGAACCCATCAACGATCATACTCGCCGGAAATGAAGGTGGCACCACCGGCAAACCCGACCAGACTCGCCGACAAATCTTCGATCACAACTTCACCATGCTATCTAACAACAACATTCTACAAGGTGTCTCCCATCAGTATCATCACCACTTCAACCCACCACAACCGCATCAGCACCACGCCTTCTTCGACCCACGCGCCTTCCAAAGCGCGTTCACCACTTCCTTCTCTCCACCACCACGTTCCATGTTGTCGCTTAACTCAATCCCACCTTTGGCCACCCCCCACTGTGGGCTTGGATTTCTGCTCATGCACAAGCCTGATGATGTCATGAACTTCGAGGGCTCTGCTCACAGACTTGGGCATGGGCCTGGACTTGGGCTTAACCTCGGAGGCCGCACCTACTTTGATCCGTTCAATGACAACACGGTCAACCGACTCTACCGAACTAAGACGGTAGAGTCGGTTACGACGTTGTCGTCGAATTTGCCACGGTGTCAGGCGGAAGGATGCAATGCGGACCTTTCCGACGCGAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTATCACTCCAAGGCCGCCACTGTCGTTGCTGCCGGGTTGACTCAGCGATTCTGCCAACAGTGTAGCAGATTCCACCTTCTTTCAGAATTTGACAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAGCAGATTGCTCAAGAAATTCACAAATCTCAGCATTCTTTGGACAATGTTGCAAGGTCCTTACCTGAATCTGGAGCTCAATCTTCGTCGTCGTCGGGGAAGGTGGCAGTACGTGTCACCCCCTGA 864 0.5278 MLDYEWGNPSTIILAGNEGGTTGKPDQTRRQIFDHNFTMLSNNNILQGVSHQYHHHFNPPQPHQHHAFFDPRAFQSAFTTSFSPPPRSMLSLNSIPPLATPHCGLGFLLMHKPDDVMNFEGSAHRLGHGPGLGLNLGGRTYFDPFNDNTVNRLYRTKTVESVTTLSSNLPRCQAEGCNADLSDAKHYHRRHKVCEYHSKAATVVAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQIAQEIHKSQHSLDNVARSLPESGAQSSSSSGKVAVRVTP* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0635 287 Pfam SBP domain 172 245 IPR004333 GO:0003677
Gso1g0635 287 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 128 278 IPR044817 GO:0003677
Gso1g0635 287 SUPERFAMILY SBT domain 170 247 IPR036893 GO:0003677|GO:0005634
Gso1g0635 287 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 128 278 - -
Gso1g0635 287 Gene3D - 163 233 IPR036893 GO:0003677|GO:0005634
Gso1g0635 287 MobiDBLite consensus disorder prediction 252 287 - -
Gso1g0635 287 MobiDBLite consensus disorder prediction 238 287 - -
Gso1g0635 287 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0635 Gso-Chr1 16818701 16821613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0635 1 219 SBP-box Gene Family AT1G02065 40.650 8.60e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso1g0635 SBP 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0635 - - gmx:100808178 542.347