Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0634 ATGGAGTTCGGAGGGAACATGTTCTGCCTTAACAACAGAGACCAAAATGGAAACACTAACAACAACGGTAACACTTTCGCTTGGGATTCATGGGAAACCCCCGCCAATAGTAGTAATAATAACAACAACAACAACACCAGTTCCAGACTGGTCAACGCTTTCCACCTTCCAGCCGCCTCGAGGGTCGCGGAGGCGGATGGATCCGTCCCCGCGACCCGTCATGAAGCGGCAGGGCTGGCCAGCGCGCTCATGTTCCTCCCTCAGAACGGCGGCGGTATGCGTCACCGCCAGCAGCAGCAGCATCCGTACGGTGGGGATGGGTCCCACGTGCACCCGGATCCACACCTCATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGACACTAGCGGCAGTGGGAGTGGGAGTGTTGCTGCTGCTGCTACTTTGGGTGGAGGGTTGGTGTTGGGGGATAAGAGAGGGAAAGGTTATTCCTCCGGTGGTGGTGCATCGGTGAAGGCGGCGGGGTTAACGGCGGTGACGGTGCCGAGGTGTCAGGTAGAGGGGTGCCACTTGGCGCTGCTAAACGCGAAGGATTACCACCGGAGGCACAAGGTGTGTGAGATGCACTCAAAGGCTCCCAAAGTTGTGGTCTTAGGCATGGAACAGAGGTTCTGCCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATAATTCAAAGAGGAGTTGTAGGAGGAGACTAGCTGGTCACAACGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCAAGGAATTCTTCAAAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCAAGAAGTGATTCTTGGCTTTCTCCTTCTGATCTCTCCATAAGATGCAGTGCCGCATTGCGTGAATTGATAGCCGAAAACCGGGCAGCCATCATGGCCAGACAATTTGTTTCAGATAGAGATTGGCATAATCATCACCATGCAGTGGAAGACTTCAAGGAGATCCAACCTGAGTCCAATTACTTCCCACAACAAATGTTTCCCCAGACACAATGA 1035 0.5285 MEFGGNMFCLNNRDQNGNTNNNGNTFAWDSWETPANSSNNNNNNNTSSRLVNAFHLPAASRVAEADGSVPATRHEAAGLASALMFLPQNGGGMRHRQQQQHPYGGDGSHVHPDPHLMCLKLGKRHYFEDTSGSGSGSVAAAATLGGGLVLGDKRGKGYSSGGGASVKAAGLTAVTVPRCQVEGCHLALLNAKDYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVSEFDNSKRSCRRRLAGHNERRRKSSHDSVARNSSKGGCALSLLSSRSDSWLSPSDLSIRCSAALRELIAENRAAIMARQFVSDRDWHNHHHAVEDFKEIQPESNYFPQQMFPQTQ* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0634 344 MobiDBLite consensus disorder prediction 91 110 - -
Gso1g0634 344 MobiDBLite consensus disorder prediction 13 47 - -
Gso1g0634 344 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Gso1g0634 344 Gene3D - 172 240 IPR036893 GO:0003677|GO:0005634
Gso1g0634 344 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 344 IPR044817 GO:0003677
Gso1g0634 344 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 44 344 - -
Gso1g0634 344 SUPERFAMILY SBT domain 177 258 IPR036893 GO:0003677|GO:0005634
Gso1g0634 344 MobiDBLite consensus disorder prediction 243 263 - -
Gso1g0634 344 Pfam SBP domain 179 252 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0634 Gso-Chr1 16707609 16714062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0634 117 252 SBP-box Gene Family AT1G27370 52.555 5.66e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso1g0634 SBP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0634 - - gmx:100806582 622.083