Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0622 ATGAATCTTAGCTATGAGCAGAGGCTCCAGGTTGTCGCCAGACTCATTCTCGACGAAGACTCACGCCCCGGAGACGCGCCGCTTTACCAGGAGGAGCTTGGGCTGAGGGTGACCCTCAAGCCGCACCAGGTGGAAGGGGTTTCGTGGCTCATACGGAGGTACAAACTCGGTGTCAACGTCGTCCTCGGTGATGAGATGGGACTGGGCAAGACTTTGCAAGCTATCTCCTTTTTAAGCTATTTAAAAGTATGCCGGTTGTCACTTGGGCCATTTTTGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATAGTCAAATTTACCCCTAAACTCAAAGTCTTCAAATATGTTGGTGATAAAGAATGCAGGCGCAATCTACGCATGAAAATACATGAATATGTAACAGGGCAGTCATCAACACTGAATGTCTTGTTGCCTTTTGATGTGCTGTTAACCTCATATGACATTGCACTGATGGATCAGGATTTTCTTTCTCAAATATCATGGCAGTATGCAATTATTGATGAAGCTCAGAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATTGCTATATAATGCCAAGACGGTTGTTGATGACTGGCACACCTATTCAAAACAACCTTTCTGAATTGTGGGCGTTGATGTATTTTTGCATGCCTTCTGTTTTTGGTACACCGGATCAGTTCCTCTCTATGTTTAAGGACATCAGTGATCTTTCACCAGTTCATGATACTCCAAAGGTAAAGGAGAGACTTAAAATTTTGAGAAGTGTATTGGGAGCCTTTATGCTTCGACGTACCAAGTCAAAGCTTATCGAGTGTGGAAATTTAGTACTACCACCTCTCACTGTGACAACTGTGTTAGTACCGCTTGTCATCCTGCAGAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCATAAGCTACTTGCACTATCTTTTGGAACTTCAAATCATGAGTCACTACAGAATATTGTGATACAACTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATTGAGTCCGAACCGTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTGCTTATTCTGGACCAACTTCTTCAGAAGTTGCATTACTCTGGACACCGGGTTCTCCTTTTTGCTCAAATGACCCATACACTTGACATTTTGCAAGATTTTCTGGAGTTGCGAAAGTATTCTTATGAACGTCTTGATGGATCGATTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGTAGCTCATCAGCTAATATGGGCTTGAATTCTGAAGCTGACCAAAATGAAGCATTTGTTTTTATAATCTCAACAAGAGCAGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACACAGAATTGGCCAGATGAACCATGTATTGTGTATAAACCTTGTTACAGAGCGGACAGTGGAGGAAGTAATTATGCGCAGGGCAGAGAGAAAATTGCTGCTGAGCCTCAATGTTATAGGTGATAACATTCTCAAAGATGACAATAAAGAACCATCTGAAGTTGGAAGTGGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGATCCCACTGAGATCAATGATGGAAATCATAGGAATATGAACATACCAGAAATTTGTGCTATGGCTGACAGGGTGCTTGCTATGCGTGATGAACAAATACTTGATAATGATGAAAGGAAATTTGAGGTCAATCCAACAAACATTTTAAAAGGGGATGCTGTTAAGGAAAGAGATTCTGCTTCTCTCTCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTTTCTTGGGTTAAAAAATTTGAGGAAGTGTCTAAATCAAGTTGTGACTCAATCACAGACTTGAGGAGCAGAAGAAATGTAGATGAGGAAAAGAGTCTAAAAATTGAGTCTGCAAGGAAGAAGGCAGAGGAAAAGAAGCTAGCTAGGTGGGAAGCTCTTGGATATCAATCATTGAATGTAAAAGACGCTATCAGCCCAACGGGCAATGACATCGCTTCAGCTTCTGGGTCTGTTCATTTTGTGTATGGAGATTGTACAGCTCCTTCAAATGTTTGTTCATCTGAACCTGCTATAATTTTCAGCTGCGTTGACACCTCTGGACATTGGGGTCACGGTGGAATGTTTGATGCACTGTCCAAACTTTCTACAAGCATTGGTGATGCATATCAATGGGCTTCTGAACATGGGGATTTGCATCTTGGTGATCTGCATCTTATAAGGCTTGATGATTGTTGTGGTGAACAAATGGATGGAAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCACAAAATCCGTCGCAGTGAAATCTCACTTCCCCACTTGGAAAGCAGCTTAACAAAGGCAGCGTACTCAGCTGCTCAGAATTCTGATATTATTATCGAAGATCACATTAAGGCTCCAGGCTTACTTAACTCTGTAGACTCAAAATATAGTTTTGGCAAGAAGACCGTTGAAGACTTGTTGTTTTAG 2598 0.4169 MNLSYEQRLQVVARLILDEDSRPGDAPLYQEELGLRVTLKPHQVEGVSWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVCRLSLGPFLVICPLSVTDGWVSEIVKFTPKLKVFKYVGDKECRRNLRMKIHEYVTGQSSTLNVLLPFDVLLTSYDIALMDQDFLSQISWQYAIIDEAQRLKNPSSVLFNVLKDCYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTPDQFLSMFKDISDLSPVHDTPKVKERLKILRSVLGAFMLRRTKSKLIECGNLVLPPLTVTTVLVPLVILQKKVYMSILRKELHKLLALSFGTSNHESLQNIVIQLRKACSHPYLFPGIESEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSANMGLNSEADQNEAFVFIISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTERTVEEVIMRRAERKLLLSLNVIGDNILKDDNKEPSEVGSGDLKSIIFGLHMFDPTEINDGNHRNMNIPEICAMADRVLAMRDEQILDNDERKFEVNPTNILKGDAVKERDSASLSCDLGLDEASYLSWVKKFEEVSKSSCDSITDLRSRRNVDEEKSLKIESARKKAEEKKLARWEALGYQSLNVKDAISPTGNDIASASGSVHFVYGDCTAPSNVCSSEPAIIFSCVDTSGHWGHGGMFDALSKLSTSIGDAYQWASEHGDLHLGDLHLIRLDDCCGEQMDGNAPKMVALAVVQSYNPRHKIRRSEISLPHLESSLTKAAYSAAQNSDIIIEDHIKAPGLLNSVDSKYSFGKKTVEDLLF* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0622 865 Gene3D - 284 596 IPR027417 -
Gso1g0622 865 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 542 IPR001650 -
Gso1g0622 865 PANTHER HELICASE CHR10-RELATED 3 834 - -
Gso1g0622 865 SMART helicmild6 396 491 IPR001650 -
Gso1g0622 865 CDD SF2_C_SNF 359 502 - -
Gso1g0622 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 531 IPR027417 -
Gso1g0622 865 SMART ultradead3 35 239 IPR014001 -
Gso1g0622 865 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 3 834 - -
Gso1g0622 865 Pfam SNF2-related domain 57 346 IPR000330 GO:0005524|GO:0140658
Gso1g0622 865 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 228 IPR014001 -
Gso1g0622 865 Pfam Helicase conserved C-terminal domain 367 491 IPR001650 -
Gso1g0622 865 Gene3D - 20 283 IPR038718 -
Gso1g0622 865 SUPERFAMILY Macro domain-like 707 831 IPR043472 -
Gso1g0622 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 273 IPR027417 -
Gso1g0622 865 Gene3D Leucine Aminopeptidase, subunit E, domain 1 703 850 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0622 Gso-Chr1 15568170 15614960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0622 30 550 RAD5 or RAD16-like Gene Family AT1G02670 25.162 1.57e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso1g0622 SNF2_N 4.7e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0622 K20092 - gmx:100797182 1601.26