Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0613 ATGGAAAGTGATGCTGGGGAAAACTTGTTTGGCACATTCTCCTCCTCCACGACATCCATCACCGCCTCATCATCGTCATCACCAACATCTTCCACCACAACAAGCTCAAACTCATGCACCAAACATGACTCCAAAATAAGTCCACCTCAAAATCAAAACACCCCAAATAGCAAGAAAAGACAAAGAAGTGATGACAATGAGAACAAACACCACCCTAGTTATAGAGGTGTGAGAATGAGAGCATGGGGAAAATGGGTGTCTGAGATCCGTGAGCCAAGAAAGAAGTCAAGGATATGGCTTGGAACATACCCTACTGCAGAAATGGCAGCAAGAGCACATGATGTGGCAGCTTTAGCCGTCAAGGGCCATTCAGCTTTCCTCAATTTCCCCAATTTAGCTCAAGATCTTCCAAGGCCCACCACCACATCTCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAACCACCACTTTCTTTGATGATGAAATTGTTAACCACTGTCAAGCTGAAAAAGCTGAACAAAACCATGGAGAACAACAAGCTTCTCCTTCAACTCTATGCATGATGGACAATAGTACTGAAGCAGAGCAAATTCAAGCAGAACAAGCTTCTTCCACTCAAGAGTCTTCTAGTTCTCATTCTACTGCAGATGAAGAGACACTGTTTGACCTACCAGATCTTTTCCCTGATGGAAACTCTGGACTTTTCTCCTATTCTTCTTGTTGGCATTTATGTGCAGTTGATAGTGGATTCAGGCTAGAAGAGCAGTTTTTGTGGGAGAATTTCTAG 792 0.4394 MESDAGENLFGTFSSSTTSITASSSSSPTSSTTTSSNSCTKHDSKISPPQNQNTPNSKKRQRSDDNENKHHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAVKGHSAFLNFPNLAQDLPRPTTTSPKDIQAAAAKAATTTFFDDEIVNHCQAEKAEQNHGEQQASPSTLCMMDNSTEAEQIQAEQASSTQESSSSHSTADEETLFDLPDLFPDGNSGLFSYSSCWHLCAVDSGFRLEEQFLWENF* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0613 263 MobiDBLite consensus disorder prediction 196 219 - -
Gso1g0613 263 PANTHER ETHYLENE RESPONSE FACTOR 3 263 - -
Gso1g0613 263 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Gso1g0613 263 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Gso1g0613 263 CDD AP2 72 132 IPR001471 GO:0003700|GO:0006355
Gso1g0613 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 263 - -
Gso1g0613 263 MobiDBLite consensus disorder prediction 1 75 - -
Gso1g0613 263 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Gso1g0613 263 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Gso1g0613 263 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Gso1g0613 263 MobiDBLite consensus disorder prediction 58 74 - -
Gso1g0613 263 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Gso1g0613 263 MobiDBLite consensus disorder prediction 8 57 - -
Gso1g0613 263 Pfam AP2 domain 72 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0613 Gso-Chr1 14868094 14869436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0613 61 259 AP2-EREBP Transcription Factor Family AT2G44940 54.808 1.05e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso1g0613 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0613 - - gmx:100792964 457.603