Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0607 ATGGTTATCGCAAATTATGGGTTCCTAGAACACCCACTTTGTGTCCCTCAGGACTCATTAGAATGTTTGGGAATGATGAATTGGGAAGGCATGGATTCAATTGATTCCATGTTTTCTACCCCTTGGGAGAGTGAAAAGGAAAGATTGGAACAACCTGAAAAGGATAAAACGGAGAGGAAATCATTCACTGATGTGTCAAATAACCAAGCTAATCATATGTCTCTATTAACGCGGCTAGACGACGAGTCAAATTTAGCTGCTGAGAAGTCTCAAACTAAGATCTTGAAAACAAAAAACATAGCGGCTCGATCATTGTCCAAGTGCAAAATTGATTTTCTGAATTCGACACAGAGTGGGAGGGATGCTAAGATCTGGGAGAAAAGATGTGGTCACAAGGATGCTAGGATCTGGGAGAGAAGATGTAGTCATTGTGACGCCATAAAAACTCCTCAATGGAGAACCGGTCCTTTTGGGCGAAATACTCTGTGCAATGCTTGTGGTATACGATTCAAGGCAGGGAAGTTATATCCAGAGTATAGACCTGCAGATAGTCCAACGTTTGATGTAAGCAAGCATTCAAATGTTCATAAAGAGATAATGAAAATGAGAAACCACCTTAGTTAA 624 0.4071 MVIANYGFLEHPLCVPQDSLECLGMMNWEGMDSIDSMFSTPWESEKERLEQPEKDKTERKSFTDVSNNQANHMSLLTRLDDESNLAAEKSQTKILKTKNIAARSLSKCKIDFLNSTQSGRDAKIWEKRCGHKDARIWERRCSHCDAIKTPQWRTGPFGRNTLCNACGIRFKAGKLYPEYRPADSPTFDVSKHSNVHKEIMKMRNHLS* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0607 207 CDD ZnF_GATA 140 191 IPR000679 GO:0006355|GO:0043565
Gso1g0607 207 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 196 - -
Gso1g0607 207 MobiDBLite consensus disorder prediction 42 64 - -
Gso1g0607 207 PANTHER GATA TRANSCRIPTION FACTOR 51 204 - -
Gso1g0607 207 ProSitePatterns GATA-type zinc finger domain. 141 166 IPR000679 GO:0006355|GO:0043565
Gso1g0607 207 Pfam GATA zinc finger 141 172 IPR000679 GO:0006355|GO:0043565
Gso1g0607 207 SMART GATA_3 135 185 IPR000679 GO:0006355|GO:0043565
Gso1g0607 207 MobiDBLite consensus disorder prediction 42 62 - -
Gso1g0607 207 Gene3D - 137 186 IPR013088 GO:0006355|GO:0008270
Gso1g0607 207 ProSiteProfiles GATA-type zinc finger domain profile. 139 171 IPR000679 GO:0006355|GO:0043565
Gso1g0607 207 PANTHER GATA TRANSCRIPTION FACTOR 1 51 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0607 Gso-Chr1 13620372 13620995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0607 136 203 C2C2-Gata Transcription Factor Family AT4G34680 63.235 1.13e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso1g0607 GATA 1.3e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0607 - - gmx:102662403 436.802