Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0600 ATGGAGAGAAGAAGGGACGTTGCTCTCTTTTGTTTAGCTTTGTTCTTCTTGTGGACTTCAGTGGCTGCTTTGCTTTCTCCTAAAGGTGTCAACTATGAAGTTCAAGCACTTATGGGCATTAGGAACTCTCTGGCGGATCCTCATTCTGTCTTAAATAACTGGGATCCTGATGCTGTGGATCCTTGCAACTGGGCTATGGTCACTTGCTCTTCTGATCATTTTGTGATTGCCCTTGGGATTCCAAGCCAAAATATATCTGGCACTCTCTCACCAAGCATAGGAAACTTAACAAACCTCCAAACTGTGCTTCTGCAGGATAATAATATAACAGGACCAATCCCTTCTGAGATTGGAAGGCTCCAAAAGCTTCAAACTCTTGATCTTTCTGACAATTTCTTCACTGGTCAACTTCCAGATTCTCTTTCCCACATGAAGGGTCTCCATTATTTGCGGCTAAACAATAACAGTCTCACTGGACCAATTCCTTCCTCTTTGGCTAACATGACTCAGCTTGCCTTTCTGGATATCTCTTATAATAACTTGAGTGAACCTGTACCAAGAATAAATGCAAAAACATTCAATATTGTAGGCAATCCTCAGATATGTGTCACGGGAGTTGAGAAGAACTGCTCCAGAACAACATCAATTCCTTCTGCTCCGAATAATTCTCAAGATTCACAATCCACCAAAAGACCGAAGAGTCACAAAGTTGCCTTGGCGTTTGCTTCAAGCTTAAGCTGCATATGCTTACTAATTCTGGGACTTGGCTTCCTCATCTGGTGGAGACAAAGATATAACAAGCAAATATTCTTTGTTGTTAATGAACAACACCGTGAAGAGGTTTGCCTTGGAAACCTCAAGAAGTTTCACTTCAGAGAACTTCAGCTTGCTACAAATAACTTCAGCAGCAAGAACTTGATTGGCAAAGGTGGATTTGGAAATGTCTACAAAGGGTATCTCCAAGATGGTACAGTTATAGCAGTAAAAAGGCTTAAAGATGGTAATGCCATTGGAGGTGAGATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTCCATCGGAATCTTCTTCGCCTGTATGGATTCTGCATGACAGCTACAGAGAGGCTCTTGGTTTATCCCTACATGTCAAATGGCAGTGTTGCTTCCCGTCTAAAAGCCAAGCCAGCTTTGGACTGGCCAACAAGGAAAAGAATAGCTTTAGGAGCTGGAAGAGGCTTGCTATATTTGCACGAACAGTGTGATCCAAAGATTATTCATAGGGATGTGAAGGCAGCAAATATCTTGCTTGATGATTATTGTGAGGCTGTGGTGGGAGATTTTGGGTTGGCAAAGCTATTAGACCACAGGGATTCACATGTGACAACAGCAGTGAGAGGTACTGTGGGGCACATAGCCCCTGAGTATCTCTCTACAGGCCAATCTTCTGAGAAAACAGATGTGTTTGGGTTTGGAATTCTTCTTCTTGAACTGATATCTGGCCAAAGAGCTCTTGAGTTTGGGAAAGCAGCAAACCAGAAAGGAGCCATGCTAGACTGGGTGAAGAAAATCCATCAAGAGAAGAAAATTGACTTGTTGGTTGACAAGGACCTGAAAAACAACTATGATAGGATTGAGCTTGATGAAATAGTTCAAGTGGCTCTTCTATGTACTCAATACCTTCCAAGCTACAGACCAAAGATGTCTGAAGTGGTTAGGATGCTTGAAGGAGATGGTCTTGCAGAGAAATGGGAGGCCTCACAGAGAGCTGAATCCACAAGAAGTAGAGGCAATGAACTCTCATCTTCAGAGCGCTACTCTGATCTCACTGATGACTCTTCATTACTAGCCCAAGCAATGGAACTTTCTGGACCAAGATGA 1866 0.4282 MERRRDVALFCLALFFLWTSVAALLSPKGVNYEVQALMGIRNSLADPHSVLNNWDPDAVDPCNWAMVTCSSDHFVIALGIPSQNISGTLSPSIGNLTNLQTVLLQDNNITGPIPSEIGRLQKLQTLDLSDNFFTGQLPDSLSHMKGLHYLRLNNNSLTGPIPSSLANMTQLAFLDISYNNLSEPVPRINAKTFNIVGNPQICVTGVEKNCSRTTSIPSAPNNSQDSQSTKRPKSHKVALAFASSLSCICLLILGLGFLIWWRQRYNKQIFFVVNEQHREEVCLGNLKKFHFRELQLATNNFSSKNLIGKGGFGNVYKGYLQDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTATERLLVYPYMSNGSVASRLKAKPALDWPTRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAMLDWVKKIHQEKKIDLLVDKDLKNNYDRIELDEIVQVALLCTQYLPSYRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0600 621 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Gso1g0600 621 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 3 621 - -
Gso1g0600 621 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Gso1g0600 621 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Gso1g0600 621 MobiDBLite consensus disorder prediction 578 609 - -
Gso1g0600 621 SUPERFAMILY L domain-like 32 302 - -
Gso1g0600 621 SMART serkin_6 301 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0600 621 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Gso1g0600 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Gso1g0600 621 ProSiteProfiles Protein kinase domain profile. 301 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0600 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 621 - -
Gso1g0600 621 Pfam Protein kinase domain 302 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0600 621 Gene3D Transferase(Phosphotransferase) domain 1 378 590 - -
Gso1g0600 621 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Gso1g0600 621 MobiDBLite consensus disorder prediction 588 609 - -
Gso1g0600 621 SUPERFAMILY Protein kinase-like (PK-like) 282 571 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0600 Gso-Chr1 13091202 13096020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0600 8 621 Receptor kinase-like Gene Family AT5G16000 74.080 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gso1g0600 Pkinase 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0600 - - gmx:100804283 1208.36