Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0577 ATGGGTGACAAAGAAAAGTTTGAGTTGGATAGAAACGAGGATCCTATGAGTTATTCTAGTGGAATGCACTCGGATTGGAGATTTGGGGGTGCAAATATTGCAAGTTCTTCTGTAGCTATGGTTGGCCTGGGGAATTCTATGAATGTCAGCAGAGGGGATTTGATTGGTTCTTCTTCATGTTCCTCTGCTTCAATGGTGGACTCATTTGGTCCAAACTACTGGGAAAACCCCACCTGTTCCCAAAACTTGGGATTTTGTGACATTAATGTCCACAACAATGGGGGTTCTTCAAGCACAGTTGCAATCAGAAAAGATGGTTTTGGATTTGGAAGAGCTGGTCAGGATCATCATGAAACACTTGAAATGGGTTGGAACCCTGCTAATTCTATATTATCAAATGGACCAGGGATGTTTCCCCACACTTTGTCTCAGTTTCCAACTGATTCTGGATTCATTGAGAGAGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTAGTGATATGGTAAACTCATATGGGATTGCTCAATCCATGGGGCTGTATGGAGCAAGAGATGCTATTGCAGGCCATGGGATGAAATCAGTAACTGGAGGGCAATCTCAGGGAGGTGATATGAATGTAGTTGAAGCTACAAAGGATGTGTCTCCATCTGTTGAACATCTTGTTGCTGCTAAAGGAAGCCCTCTCAAGAGTGATAGAAGAAGTGAAGGCCATGTTATATCCCAAGATGAAGGGAAGCAATCTCTTGTTAGGCCCGCTAATGAGTCTGATAGAGCTGAATCTAGTGATGATGGTGGTGGTCAGGATGACTCCCCAATGTTGGAAGGTACTAGTGGGGAACCTTCTAGCAAAGGACTAAACACAAAGAAAAGGAAAAGAAGTGGACAGGATGGTGATAATGATAAAGCCAATGGAGCTCAAGAACTACCTAGTGAAGGTGCAGAGGACAACTATGAGAATCAACAGAAGGGAGACCACCAACCAACTTCAACAGCCAAGGCTTCTGGGAAGAATGCCAAACTGGGGTCTCAAGCTTCTGATCCACCCAAGGAGGAATACATACATGTTAGAGCTCGCCGGGGTCAAGCAACAAACAGCCATAGCCTTGCAGAGAGAGTGAGGAGGGAAAAGATAAGTGAGAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATATTCTTCAACAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGATATGTCCATGGCTTTTCCTCCATTACATCCACCTCAACCTGGGCTGATTCATCCAGTAATTCCCAACATGGCAAACTCATCTGATATCCTTCAAAGAACCATCCATCCACAGTTAGCTCCCTTGAATGGTGGATTAAAGGAACCAAATCAGCTGCCTGATGTATGGGAGGATGAACTTCACAATGTTGTACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATGGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGA 1653 0.4398 MGDKEKFELDRNEDPMSYSSGMHSDWRFGGANIASSSVAMVGLGNSMNVSRGDLIGSSSCSSASMVDSFGPNYWENPTCSQNLGFCDINVHNNGGSSSTVAIRKDGFGFGRAGQDHHETLEMGWNPANSILSNGPGMFPHTLSQFPTDSGFIERAARFSCFSGGNFSDMVNSYGIAQSMGLYGARDAIAGHGMKSVTGGQSQGGDMNVVEATKDVSPSVEHLVAAKGSPLKSDRRSEGHVISQDEGKQSLVRPANESDRAESSDDGGGQDDSPMLEGTSGEPSSKGLNTKKRKRSGQDGDNDKANGAQELPSEGAEDNYENQQKGDHQPTSTAKASGKNAKLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQQRPGPSSALGFPLDMSMAFPPLHPPQPGLIHPVIPNMANSSDILQRTIHPQLAPLNGGLKEPNQLPDVWEDELHNVVQMSFATTAPLTSQDFDGTGPASQMKVEL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0577 550 MobiDBLite consensus disorder prediction 286 300 - -
Gso1g0577 550 MobiDBLite consensus disorder prediction 227 242 - -
Gso1g0577 550 MobiDBLite consensus disorder prediction 251 266 - -
Gso1g0577 550 MobiDBLite consensus disorder prediction 224 350 - -
Gso1g0577 550 CDD bHLH_AtBPE_like 353 438 - -
Gso1g0577 550 SMART finulus 369 419 IPR011598 GO:0046983
Gso1g0577 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 413 IPR011598 GO:0046983
Gso1g0577 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 432 IPR036638 GO:0046983
Gso1g0577 550 MobiDBLite consensus disorder prediction 324 343 - -
Gso1g0577 550 PANTHER BHLH TRANSCRIPTION FACTOR 10 549 - -
Gso1g0577 550 MobiDBLite consensus disorder prediction 1 21 - -
Gso1g0577 550 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 10 549 IPR024097 GO:0006355
Gso1g0577 550 Gene3D - 360 433 IPR036638 GO:0046983
Gso1g0577 550 Pfam Helix-loop-helix DNA-binding domain 366 414 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0577 Gso-Chr1 11632608 11637526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0577 56 526 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 47.401 5.26e-120 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g0577 HLH 7.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0577 - - gmx:100797720 1107.43