Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0561 ATGAGAGCAGGGAAAGGGAGCCAGGAAGAGGATGAGTACGAGGAAGAAGAGTTTGGTTCTTCCAAGAAACAGGGTACTTCCTCTGCCCCTAACGCCAACAAAGATGGAAAAGCCATCGACAAGGCTAGTGCGATAAGATCGAAACATTCTGTGACCGAGCAGCGGAGAAGGAGCAAGATAAATGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACGGCATCATTTTTATTAGAGGTGATGGAGTATGTTCAGTACTTACAGGAGAAGGTACAAAAGTATGAAGGTTCATATCAAGGTTGGGGTCAAGAGCCCCTGAAGTTGATGCCATGGAGAAATAGTCATTGGCGTGTCCAGAGCTTTGCTGGTCAACCTACAGCTGTAAAGAATGGTTTGGGTCCAGTATCACCTTTTCCTGTAAAGTTTGACGAAAGCAATGCTAGTATCTCTCCAACTATGCTTAGTGGCACCCAGAATACAATAGATCCTTATCAGAGCAGGGATATTGTCAACAAGACGGCTGAGAGGCAACCTGATTTAGTAAACAAGGGAATGCCTCTTCCCCTTGCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGTACTTGCACATCCTCTTCATGGAACTGTTTCTGATCCACAATCAACTGAATGCCCAACAACTAGTGAACCACAGAACCAACAGGATGAATTCACGGTTGAAGGAGGGACAATTAGCATCTCAAGTGCATATTCCCAAGGGTTGTTGAATAATCTAACTCAAGCGCTACAAAGTGCTGGTTTAGATCTGTCACAGGCTAGCATCTCAGTTCAGATTAATCTTGGGAAACGAGGAAACAAAGGACTGAGTTGTGGGACCTCTTCTCCCAAGCATCATGACAACCCTTCTTCAAACAATCAAACAATTGCACATTTTAGAGATGCAGGCAGTGGAGAAGACTCGGATCAAGTACAAAAAAGAATGAAAACATATAAGTGA 1008 0.4385 MRAGKGSQEEDEYEEEEFGSSKKQGTSSAPNANKDGKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVMEYVQYLQEKVQKYEGSYQGWGQEPLKLMPWRNSHWRVQSFAGQPTAVKNGLGPVSPFPVKFDESNASISPTMLSGTQNTIDPYQSRDIVNKTAERQPDLVNKGMPLPLAMHANMSVPVRSDGVLAHPLHGTVSDPQSTECPTTSEPQNQQDEFTVEGGTISISSAYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRGNKGLSCGTSSPKHHDNPSSNNQTIAHFRDAGSGEDSDQVQKRMKTYK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0561 335 MobiDBLite consensus disorder prediction 39 57 - -
Gso1g0561 335 SMART finulus 50 100 IPR011598 GO:0046983
Gso1g0561 335 MobiDBLite consensus disorder prediction 1 57 - -
Gso1g0561 335 MobiDBLite consensus disorder prediction 291 335 - -
Gso1g0561 335 CDD bHLH_AtBIM_like 43 119 - -
Gso1g0561 335 MobiDBLite consensus disorder prediction 217 237 - -
Gso1g0561 335 MobiDBLite consensus disorder prediction 291 315 - -
Gso1g0561 335 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
Gso1g0561 335 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 333 IPR044295 GO:0003700|GO:0006351|GO:0046983
Gso1g0561 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 115 IPR036638 GO:0046983
Gso1g0561 335 PANTHER TRANSCRIPTION FACTOR BIM2 1 333 - -
Gso1g0561 335 Gene3D - 42 113 IPR036638 GO:0046983
Gso1g0561 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Gso1g0561 335 MobiDBLite consensus disorder prediction 219 237 - -
Gso1g0561 335 MobiDBLite consensus disorder prediction 318 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0561 Gso-Chr1 10728777 10734404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0561 1 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 54.599 6.28e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g0561 HLH 6.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0561 - - gmx:100795416 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0561 1 10728777 10734404 Gso2g1021 2 12101788 12107127 GST