Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0558 ATGGCTTCAAGAACTATATGTTTTACCATTCAAGTGACTCTTGTAGTAGCTTTTCTAACAACAAAGGTTGTTTTATCTGATGACACTGTGCCAATTCCCGCGAACAAAGCACAATTAGGTGAATGGTATAATACTAATGTGGGGCCTTTAGATCAAAGAAAGAGCACCGTGGACCCAGCATTGGTGACTGCTGAAGAAGGCGCTAAGGTTGTAAAGGTGATGCAAGATGGCAGTGGGGAATTCAAGACCATCACTGATGCCATTAAAAGTATACCTAGTGGGAACACTAAGCGTGTAATTATTTACATTGGAGCTGGAAATTATAATGAGAAAATCAAAATTGAGAAGACAAAGCCTTTTGTCACCTTGTATGGGGTACCAGAGAAAATGCCAAACTTGACTTTTGGGGGCACTGCACAACAATATGGCACTGTTGATAGTGCTACATTGATTGTTGAATCAGATTATTTTGTGGCAGCTAACATCATGATCTCGAACACTGCACCGAGACCTGATCCAAAAACGCCAGGAGGTCAAGCAGTGGCATTGCGTATTTCGGGTGACAAAGCAGCATTTTATAATTGCAAGATGTATGGATTCCAGGACACAATTTGCGATGATAGGAATAGACATTTTTTCAAAGACTGCTTAATTCAAGGCACCATGGATTATATTTTTGGAAGTGGGAAGTCACTATATGTGAGTACTGAGTTAAGAACGCTTGGCGACAATGGGATTACTGTTATAGTGGCACAAGCAAGGAAAAGCGAGACAGAGGACAATGCCTACTCATTTGTACATTGTGACGTTACTGGAACTGGGACTGGCACTTTCTTGGGGAGAGCATGGATGTCTCATCCTAGAGTGGTCTTTGCATACAGCAACATGAGTGACATTGTAAATAAATTAGGGTGGAGTAACAACAATCACCCTGAACATGACAAAACTGTTCGTTTTGGAGAGTATCAGAACTCGGGACCTGGTGCAGACCCCAAAGGGCGTGCTACTATAACTAAGCAACTAAGTGAAACGGAGGTCAAACCTTACATAACACTTGCGATGATTGAAGGCTCCAAATGGCTACTTCCTCCTCCAACTCCCAAGGTTTAA 1110 0.4207 MASRTICFTIQVTLVVAFLTTKVVLSDDTVPIPANKAQLGEWYNTNVGPLDQRKSTVDPALVTAEEGAKVVKVMQDGSGEFKTITDAIKSIPSGNTKRVIIYIGAGNYNEKIKIEKTKPFVTLYGVPEKMPNLTFGGTAQQYGTVDSATLIVESDYFVAANIMISNTAPRPDPKTPGGQAVALRISGDKAAFYNCKMYGFQDTICDDRNRHFFKDCLIQGTMDYIFGSGKSLYVSTELRTLGDNGITVIVAQARKSETEDNAYSFVHCDVTGTGTGTFLGRAWMSHPRVVFAYSNMSDIVNKLGWSNNNHPEHDKTVRFGEYQNSGPGADPKGRATITKQLSETEVKPYITLAMIEGSKWLLPPPTPKV* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0558 369 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 36 362 - -
Gso1g0558 369 PANTHER PECTINESTERASE 63-RELATED 36 362 - -
Gso1g0558 369 Pfam Pectinesterase 71 357 IPR000070 GO:0030599|GO:0042545
Gso1g0558 369 Gene3D - 66 364 IPR012334 -
Gso1g0558 369 SUPERFAMILY Pectin lyase-like 68 363 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0558 Gso-Chr1 10441914 10443767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0558 9 365 Carbohydrate Esterase AT1G69940 57.143 1.74e-153 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0558 K01051 - gmx:100816036 751.125