Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0552 ATGGTTGTTAGAGAAGATGATTTGCATGAACTACCTTTTAAGGAATTTAGATTTGTTGAATTTCCAAATGTTGTTGCTGGCAATTTTGTGTCTGGCCTGCTGGTTGATATTATTGGGGTCGTTGATCAAGTGGTCTTTCGGCATGTTTCATCGAAAAATACCAGGGTTGTTTTTAGAATGAAGGATTTGAGTGGTGAAATTTTGTCTTGCACACTTTGGGAGCATTACTGTGCTCAGTTCCTATCCTATTTGAATGAACGTGGGGATGATGGGCCGATGGTTGTTATATTGACGCATGCCAGAATAAAAGATGCACAGGGAAGTTATCCAACTTCAGTGAGCAATTCCTTCAAGGCGTCAAAACTATTGATTAATGATCCTATATTAGAAATTCAGGAATTTAAAGAGAGGCTTTTAGATTTAGGTGTTGAGGTGAGTCGAGTTTTGCTACCTGGTGATCAAGCAAGCTCACAAGTTTCAGGGGGAAGTCAGCTATCATCAAAGGATTCGTTTCTTTCAAAGGCTGAAGCCAAAACTATTTTAGAAATCAATGCCATTTCTGAGGATGTTGTTTGTGTTACCATGGGGACTATTAGCAAAATAGTCATGGATAACCATTCATGGTGTTATCCAGCCTGTGCTCAATGTCATAGGAAAACTGACATCCAAACAGGATCATTCACATGTGGATGTGGCAAGGATAATGATCATCCTGTTCTAAGGTATAGAGTTGAGGTCATGGTTACACAAAACAATGAGAGTGGCAAATTTTTGCTTTGGGACCGTGAATGTGCTGAATTGATTGGCCAAACAGCTGATGGTGTGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTCCCCTCAAGCACTTGACAAATTGTTGGGTCATGTGCTTGCTTTTAAGGTCAGGATTCAATCAAGATTCAAAAATGTAATTGTACTTAAATACTCAAAAGAACTTAAATACTCAAAAGACCAGGATTTGATCAATGTTGTTCTGGAGATGCTGCCTGATAGTGAGGCATGTTCTAAAATAGATCCTTCCAATGTTGATTGCAATGATGCTACGCATGTTGAATGTCAATTTCTGTCTGCCACAACTGACCATGATCCGGTTGCGGGATTGCCTTTAACACCCAAAAAGCGGATGTCATCTGATGAAGCCGATGATGAGTTAGGGAGCTCTCAAATTTCGCCAGCCCAGCTATCGTCTAACAAATTAACAAGACATTCTCATAGGAGCTAA 1257 0.3978 MVVREDDLHELPFKEFRFVEFPNVVAGNFVSGLLVDIIGVVDQVVFRHVSSKNTRVVFRMKDLSGEILSCTLWEHYCAQFLSYLNERGDDGPMVVILTHARIKDAQGSYPTSVSNSFKASKLLINDPILEIQEFKERLLDLGVEVSRVLLPGDQASSQVSGGSQLSSKDSFLSKAEAKTILEINAISEDVVCVTMGTISKIVMDNHSWCYPACAQCHRKTDIQTGSFTCGCGKDNDHPVLRYRVEVMVTQNNESGKFLLWDRECAELIGQTADGVNRVKIEDGDLDLNASPQALDKLLGHVLAFKVRIQSRFKNVIVLKYSKELKYSKDQDLINVVLEMLPDSEACSKIDPSNVDCNDATHVECQFLSATTDHDPVAGLPLTPKKRMSSDEADDELGSSQISPAQLSSNKLTRHSHRS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0552 418 Pfam Replication factor-A C terminal domain 196 309 IPR013955 -
Gso1g0552 418 CDD RPA1_DBD_B_like 36 138 - -
Gso1g0552 418 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 2 291 - -
Gso1g0552 418 SUPERFAMILY Nucleic acid-binding proteins 178 326 IPR012340 -
Gso1g0552 418 MobiDBLite consensus disorder prediction 394 411 - -
Gso1g0552 418 PANTHER REPLICATION FACTOR A 1, RFA1 2 291 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso1g0552 418 Gene3D - 158 334 IPR012340 -
Gso1g0552 418 MobiDBLite consensus disorder prediction 375 418 - -
Gso1g0552 418 Gene3D - 10 144 IPR012340 -
Gso1g0552 418 CDD RPA1_DBD_C 174 324 IPR013955 -
Gso1g0552 418 SUPERFAMILY Nucleic acid-binding proteins 17 138 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0552 Gso-Chr1 10155226 10157374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0552 12 286 Core DNA Replication Machinery Family AT5G08020 25.352 3.95e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0552 - - gmx:121173258 615.92