Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0539 ATGGGTAGGGGAAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACCGTCAAGTGACATTTGCAAAGAGGAGGAATGGTTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGCACGGCCAAGACACTTGAACGGTATCACAGATGCAGTTATGGAGCCTTGGAAGTCCAGCACCAACCTGAAATAGAGACACAGAGGCGCTACCAAGAGTACCTAAAGCTAAAATCCAGAGTTGAGGCACTACAGCAAACACAAAGAAACCTCCTTGGGGAAGAATTGGAGCACTTAGACGTTAACGACCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCCTTGAAGCAAATCAGGTCTAACAAGACACAGCAGATGCTTGATCAACTCTCTGATTTGCATAGAAAGGAAGAGATGCTACTGGAAACTAACAATATCCTGAGAAACAAGTTGGAGGAAATCAATGTAGCCCTACAACCAACATGGGAAGCTAGGGAGCAAAATGCTCCCTACAATTGCCACCCTCCCCAAACAGAGGGATATTATGAGACAGCAACAGCACATTGCAGCAGTACATTGAGAATTGGCTATGATTCTTCAGGATTAAATGAAGCAGGAGGAGCTGCAGGAGCCTCAGCCCAAAATGCTAGTGAATTCATGCATGGATGGATGAACTAA 741 0.4602 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGHSTAKTLERYHRCSYGALEVQHQPEIETQRRYQEYLKLKSRVEALQQTQRNLLGEELEHLDVNDLEQLERQLDSSLKQIRSNKTQQMLDQLSDLHRKEEMLLETNNILRNKLEEINVALQPTWEAREQNAPYNCHPPQTEGYYETATAHCSSTLRIGYDSSGLNEAGGAAGASAQNASEFMHGWMN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0539 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso1g0539 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 232 - -
Gso1g0539 246 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Gso1g0539 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gso1g0539 246 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Gso1g0539 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso1g0539 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso1g0539 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso1g0539 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso1g0539 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso1g0539 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso1g0539 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso1g0539 246 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso1g0539 246 PANTHER MADS BOX PROTEIN 1 232 - -
Gso1g0539 246 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0539 Gso-Chr1 9481270 9494513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0539 1 217 MADS-box Gene Family AT5G15800 63.677 1.94e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso1g0539 K-box 4.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0539 K09264 - gmx:100813520 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0539 1 9481270 9494513 Gso2g1007 2 11860722 11877866 GST