Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0533 ATGGAATCTTGGAGTTATGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGAGTTTTCACTTGATGCTTTCATGAGAAGTAGAAAGGCATTGGTTGAATGGGACAACAAATCCAACTTTGTTGAGAGAGATGGATTTAATTCAGACAGAGAGGTAGTTAAAAGCATGGAATTTGTGGATTTGGGATTCCCTGACTTGTTGCAAAAGTCTTTTCATGGAAGCCTGCCTCTAGAGACATCTAGCTATGAACTCGATAGTAATAATTCTAGTAAAAGAGGGAATTCCTCCACACATGTCATTGCTTTGGATTCTTCTATGGGGGAAGAAGAATCCAATTCAAAGCATTTAAGTTCTCTAGTTGAGTCCAAGACTCAGGATTCTTCACTGATTGATCTGAAACTAGGGAGATTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGTTGAGAAAGAAGGATTCACTTTAACTTCCATACATCCGACCACGCTTTCGAAGAGAGCTCGCACTTCCAGCTTGCCTGCACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCACAAAAGACATAAAGTTTGTGATGCTCACTCCAAAACAGCTAAAGTTATTGTAAATGGCATTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTTGTCGAGTTCGATGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCAGGACACAATGAACGCCGAAGGAAACCCCAATTTGATTACATGACTGGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACTAAGTATCTGGGGTCTTCACTACAGAACAAACCCATGTTTCCCTTTCAAGACATATTTCAAAGCAGCATCCTTTTCCCCGGAAAGCATGCTCAAATCTCTCAGAGTGGACGCGTCAAACTGGAAGAGGACTCGATTTACAGTTCCCAACTTACTGCACCCATCACACTTGATCAGGAATCATCAAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATCTGTCACACCACGCAGCATGCAATCCATTAACCAGTCATCGAGTCTTTAGTGGCATCTGCATACCCAACAGAGATGGTCAAATTTCCGAAACTCCTTTGAGGATAAGCTCTGCAGATAAACATGCACCAAATGAGTCCTTTCCATGTAATACAACCTCCAAGGAGGTTATCAAGAATAGATCCGCTGCGACATTTTCTAACACTGGTCATGCTCTCCGAGTCCACCACGGAGATGATATTTGCCAACCATCAGAGTTGCTCGACGTCAAACACCATTTTTCCTCGGAACATGCAGCCACGGTTGATTTGTTCCAACTGTCCTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAGGACTACTGTTTCCCAACTGTGTGA 1449 0.4272 MESWSYVPEEKGYLFSDEMEFSLDAFMRSRKALVEWDNKSNFVERDGFNSDREVVKSMEFVDLGFPDLLQKSFHGSLPLETSSYELDSNNSSKRGNSSTHVIALDSSMGEEESNSKHLSSLVESKTQDSSLIDLKLGRLADCKGASSDKVEKEGFTLTSIHPTTLSKRARTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQGTKYLGSSLQNKPMFPFQDIFQSSILFPGKHAQISQSGRVKLEEDSIYSSQLTAPITLDQESSSCALSLLSDQSQYLSHHAACNPLTSHRVFSGICIPNRDGQISETPLRISSADKHAPNESFPCNTTSKEVIKNRSAATFSNTGHALRVHHGDDICQPSELLDVKHHFSSEHAATVDLFQLSSHLQRVEQQRNSVLVKWENEDYCFPTV* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0533 482 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Gso1g0533 482 Pfam SBP domain 181 254 IPR004333 GO:0003677
Gso1g0533 482 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Gso1g0533 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 481 IPR044817 GO:0003677
Gso1g0533 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 43 481 - -
Gso1g0533 482 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0533 Gso-Chr1 9196864 9202769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0533 95 480 SBP-box Gene Family AT1G69170 39.709 3.54e-66 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso1g0533 SBP 2.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0533 - - gmx:100797372 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0533 1 9196864 9202769 Gso2g1005 2 11801984 11808528 GST