Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0531 ATGAACCACGAAGACAAACTCACCATGGACCTGGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTCCTCGCGGTTGGTATCCCATGCAAGAGGCTGTTAGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCCTTTCTGAGCACCAGACCCCCAAGTTCTCAAAACCAAAGCATTGATCATACCACCCTAAGTCTGCAGGGGTTTTACAGTAATGCCAAAAAGGGGCAAGCATCATCTTCATCTTCCTCACCAACAACATCCAACGAGTCAGTGTCCCCAAAAGCAGCATCATTTGTTGTGAAACCACCTGAGAAAAAGCACCGTCTCCCTTCTGCTTACAACCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCTGCGAACCCTGAGATCCCACATCGAGAAGCTTTCAGTGCTGCAGCGAAAAATTGGGCTAGGTTCATTCCAAATTCACCAACCAGTTCAGTTTCTGCAACTAAAGTTAACGCTGATTGA 525 0.4762 MNHEDKLTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPSSQNQSIDHTTLSLQGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSVSATKVNAD* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0531 174 PANTHER PROTEIN YABBY 6-RELATED 7 170 IPR006780 GO:0007275
Gso1g0531 174 SUPERFAMILY HMG-box 101 155 IPR036910 -
Gso1g0531 174 CDD HMGB-UBF_HMG-box 118 154 - -
Gso1g0531 174 MobiDBLite consensus disorder prediction 83 113 - -
Gso1g0531 174 MobiDBLite consensus disorder prediction 83 104 - -
Gso1g0531 174 Gene3D High mobility group box domain 90 161 IPR036910 -
Gso1g0531 174 Pfam YABBY protein 14 157 IPR006780 GO:0007275
Gso1g0531 174 PANTHER PROTEIN CRABS CLAW 7 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0531 Gso-Chr1 9163282 9165730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0531 1 168 C2C2-YABBY Transcription Factor Family AT1G69180 64.535 2.82e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso1g0531 YABBY 1.2e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0531 K25796 - gmx:100795791 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0531 1 9163282 9165730 Gso2g1003 2 11778192 11780633 GST