Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0527 ATGCTCACCTCGAGGCAATCCTTGTACATCTCTTCTCCTTCTCCTTCTTCTTCATTGTTTTGTATCATTCTCCTCCAACTTACATTTCTCTATGGCCTTGCCTTCTCTGCAAATCATGAAGCCTCAACACTCTTCACATGGCTCCGTAGTTCTTCTTCTGCATCACCACCACCACCCCCTCCTTTCTCCAACTGGAACCTCCTTGATCCAAATCCATGCAACTGGACATCCATAACATGCTCCTCACTAGGCCTTGTCACAGAAATTACCATACAATCCATCCCTCTAGAGCTTCCTATACCCTCCAACCTCTCTTCATTTCACTCTCTCCAAAAGCTTGTTATTTCTGATGCCAATCTCACTGGAGCCATCCCTTCAGACATTGGTGATTGTTCTTCCCTCACTGTTATTGACCTCAGCTCCAACAACCTTGTTGGCTCTATTCCTGCCAGCATTGGCAAGCTCCACAACCTTCAGAACTTGTCCTTGAACTCTAACCAGCTCTCTGGAAAAATCCCTGTGGAGTTAAGCAACTGCATTGGCCTAAAAAATCTTCTCCTTTTTGATAATCAGATAAGTGGGACTATTCCACCTGAGCTGGGAAAGTTTTCACAACTTGAGTCTCTAAGAGCAGGAGGGAACAAAGATATTGTTGGGAAGATTCCTGAAGAGATTGGAGAATGCGGCAATTTGACTGTGTTGGGGTTGGCAGATACCAGAATATCTGGTTCTTTGCCTGCTTCTTTGGGGAGACTTAAAAGGCTTCAGACACTGTCCATCTATACTACTATGCTGTCTGGTGAGATTCCACCCGAGTTAGGTAACTGTTCTGAGCTTGTTGACTTGTTCTTATATGAAAATAGCCTATCAGGGTCTATTCCATCTGAGCTTGGTAGGCTCAAGAAGCTGGAACAGTTGTTTTTGTGGCAGAATGGTCTTGTTGGGGCTATTCCAGAAGAGATTGGTAACTGTACAAGCTTGAGAAAAATTGATTTCTCTTTGAATTCTCTGTCTGGGACTATACCTGTGCCTTTGGGGGGTCTTTTGGAGCTTGAGGAGTTTATGATTAGTAATAACAATGTGTCTGGTTCAATCCCTTCCAGTCTTTCAAATGCTAAAAACCTTCAGCAGTTGCAAGTTGACACAAACCAGCTCTCAGGGTTGATTCCACCAGAGCTTGGGCAGTTGTCAAGCCTCATGGTGTTCTTTGCTTGGCAGAACCAGCTTGAGGGAAGCATTCCCTCCTCTTTGGGGAACTGTAGTAACCTTCAAGCACTCGACTTGTCGCGAAACACGCTCACCGGTAGTATTCCTGTTAGCCTATTCCAGCTCCAAAACCTCACAAAACTACTTCTGATTGCCAATGACATATCTGGTTTCATACCAAATGAAATAGGCAGTTGCAGCTCTCTGATAAGGTTGAGGCTTGGAAACAACAGGATTACTGGTAGCATTCCCAAGACAATAGGGAACCTTAAGAGCTTGAACTTTTTAGACCTCTCCGGGAACCGCCTCTCTGGGCCCGTGCCTGATGAGATTGGAAGCTGCACTGAACTGCAAATGATAGATTTCAGCTGCAACAACTTAGAAGGTCCTTTGCCTAATTCTTTGTCTTCACTATCTGCAGTTCAGGTATTGGATGCATCTTCCAACAAGTTTTCAGGTCCTCTACTGGCGAGTTTGGGCCATCTTGTTTCTCTGAGTAAGCTTATCCTTAGCAATAACTTATTTTCTGGACCTATTCCTGCATCATTGAGCCTATGTTTAAATCTCCAACTGCTTGATCTTAGTAGCAACAAGCTCAGTGGAAGCATACCAGCCGAACTCGGCCGCATTGAGACTCTAGAAATTGCTCTTAATCTTAGTTGCAATTCACTCAGTGGAATAATCCCAGCTCAGATGTTTGCTCTTAACAAGCTTTCCATATTGGACATCTCACACAACCAATTGGAAGGAGATTTGCAACCTCTTGCAGAGTTAGACAACCTTGTCTCCCTCAATGTTTCTTACAACAAATTTTCTGGCTGTCTTCCAGATAACAAACTTTTCAGGCAGTTGGCATCAAAAGACTACAGTGAAAATCAAGGGCTCTCATGCTTTATGAAGGATTCTGGCAAGACTGGTGAGACATTGAATGGAAATGATGTAAGGAACTCGCGAAGGATTAAGCTAGCCATTGGATTGCTGATAGCCTTGACAGTAATAATGATTGCTATGGGGATAACTGCTGTGATCAAAGCAAGAAGAACCATTAGAGATGATGATTCGGAATTGGGGAACTCGTGGCCGTGGCAATGCATACCTTTCCAGAAGCTAAACTTTTCAGTGGATCAAGTACTGAGATGTTTAATTGACAGAAACATAATTGGGAAGGGGTGTTCTGGTGTTGTTTATAAAGCTGCAATGGATAATGGTGAAGTCATTGCTGTGAAGAAATTGTGGCCCACAACAATTGATGAAGGAGAGGCATTTAAGGAAGAAAAAAATGGAGTTCGTGACTCTTTCTCGACTGAGGTCAAGACCCTTGGCTCAATCCGTCATAAGAACATTGTCAGATTCTTGGGGTGCTGTTGGAACAGAAAAACAAGACTGCTTATTTTTGATTACATGCCGAATGGAAGTTTAAGTAGTCTACTTCATGAGAGGACTGGAAACTCTTTGGAATGGAAACTTAGGTACAGAATCTTGTTAGGCGCTGCAGAAGGCCTTGCTTATCTGCATCATGACTGTGTCCCTCCTATAGTTCACAGAGATATCAAAGCCAATAACATCCTCATTGGTCTTGAATTTGAACCTTACATTGCTGACTTTGGCTTGGCTAAACTTGTCGATGATGGTGATTTCGGTCGTTCCTCCAATACAGTTGCTGGCTCCTATGGATATATTGCTCCAGAATATGGCTATATGATGAAGATCACAGACAAGAGTGATGTTTATAGCTATGGCATAGTTCTATTAGAAGTCTTGACAGGTAAGCAACCAATTGATCCAACCATACCAGATGGTCTACATGTTGTTGATTGGGTGAGACAGAAAAAGGCTCTTGAAGTGCTTGATCCTAGCCTACTCTCTAGACCAGAATCAGAACTAGAGGAAATGATGCAGGCATTGGGAATAGCCTTGTTGTGTGTGAACTCATCCCCAGATGAAAGGCCAACTATGAGAGATATCGTGGCGATGCTCAAGGAGATAAAGCATGAAAGGGAGGAGTATGGAAAGTTTGATGTGCTTCTAAAAGGGCCTCCTGCGAATGGTGCATGTTGGAATAAAAGCATTGGTGGAGTTCTGCCAACATCTTCATCAGTACCAGTCATGCAAACTTTGAACACAAAGCAATAA 3339 0.4328 MLTSRQSLYISSPSPSSSLFCIILLQLTFLYGLAFSANHEASTLFTWLRSSSSASPPPPPPFSNWNLLDPNPCNWTSITCSSLGLVTEITIQSIPLELPIPSNLSSFHSLQKLVISDANLTGAIPSDIGDCSSLTVIDLSSNNLVGSIPASIGKLHNLQNLSLNSNQLSGKIPVELSNCIGLKNLLLFDNQISGTIPPELGKFSQLESLRAGGNKDIVGKIPEEIGECGNLTVLGLADTRISGSLPASLGRLKRLQTLSIYTTMLSGEIPPELGNCSELVDLFLYENSLSGSIPSELGRLKKLEQLFLWQNGLVGAIPEEIGNCTSLRKIDFSLNSLSGTIPVPLGGLLELEEFMISNNNVSGSIPSSLSNAKNLQQLQVDTNQLSGLIPPELGQLSSLMVFFAWQNQLEGSIPSSLGNCSNLQALDLSRNTLTGSIPVSLFQLQNLTKLLLIANDISGFIPNEIGSCSSLIRLRLGNNRITGSIPKTIGNLKSLNFLDLSGNRLSGPVPDEIGSCTELQMIDFSCNNLEGPLPNSLSSLSAVQVLDASSNKFSGPLLASLGHLVSLSKLILSNNLFSGPIPASLSLCLNLQLLDLSSNKLSGSIPAELGRIETLEIALNLSCNSLSGIIPAQMFALNKLSILDISHNQLEGDLQPLAELDNLVSLNVSYNKFSGCLPDNKLFRQLASKDYSENQGLSCFMKDSGKTGETLNGNDVRNSRRIKLAIGLLIALTVIMIAMGITAVIKARRTIRDDDSELGNSWPWQCIPFQKLNFSVDQVLRCLIDRNIIGKGCSGVVYKAAMDNGEVIAVKKLWPTTIDEGEAFKEEKNGVRDSFSTEVKTLGSIRHKNIVRFLGCCWNRKTRLLIFDYMPNGSLSSLLHERTGNSLEWKLRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMMKITDKSDVYSYGIVLLEVLTGKQPIDPTIPDGLHVVDWVRQKKALEVLDPSLLSRPESELEEMMQALGIALLCVNSSPDERPTMRDIVAMLKEIKHEREEYGKFDVLLKGPPANGACWNKSIGGVLPTSSSVPVMQTLNTKQ* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0527 1112 PRINTS Leucine-rich repeat signature 591 604 - -
Gso1g0527 1112 PRINTS Leucine-rich repeat signature 637 650 - -
Gso1g0527 1112 ProSiteProfiles Leucine-rich repeat profile. 639 661 IPR001611 GO:0005515
Gso1g0527 1112 Gene3D Phosphorylase Kinase; domain 1 768 869 - -
Gso1g0527 1112 SUPERFAMILY Protein kinase-like (PK-like) 770 1062 IPR011009 -
Gso1g0527 1112 Gene3D Ribonuclease Inhibitor 40 156 IPR032675 -
Gso1g0527 1112 Gene3D Ribonuclease Inhibitor 340 436 IPR032675 -
Gso1g0527 1112 Gene3D Ribonuclease Inhibitor 157 243 IPR032675 -
Gso1g0527 1112 Gene3D Ribonuclease Inhibitor 618 704 IPR032675 -
Gso1g0527 1112 Gene3D Ribonuclease Inhibitor 244 339 IPR032675 -
Gso1g0527 1112 Gene3D Ribonuclease Inhibitor 532 617 IPR032675 -
Gso1g0527 1112 Gene3D Ribonuclease Inhibitor 437 531 IPR032675 -
Gso1g0527 1112 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 19 1084 - -
Gso1g0527 1112 SUPERFAMILY RNI-like 113 506 - -
Gso1g0527 1112 SUPERFAMILY RNI-like 366 679 - -
Gso1g0527 1112 Gene3D Transferase(Phosphotransferase) domain 1 870 1076 - -
Gso1g0527 1112 Pfam Protein tyrosine and serine/threonine kinase 787 1061 IPR001245 GO:0004672|GO:0006468
Gso1g0527 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 914 926 IPR008271 GO:0004672|GO:0006468
Gso1g0527 1112 Pfam Leucine rich repeat 109 168 IPR001611 GO:0005515
Gso1g0527 1112 Pfam Leucine rich repeat N-terminal domain 38 81 IPR013210 -
Gso1g0527 1112 ProSitePatterns Protein kinases ATP-binding region signature. 789 812 IPR017441 GO:0005524
Gso1g0527 1112 SMART serkin_6 783 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0527 1112 ProSiteProfiles Protein kinase domain profile. 783 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g0527 1112 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 1084 - -
Gso1g0527 1112 SMART LRR_typ_2 492 516 IPR003591 -
Gso1g0527 1112 SMART LRR_typ_2 420 444 IPR003591 -
Gso1g0527 1112 SMART LRR_typ_2 155 179 IPR003591 -
Gso1g0527 1112 SMART LRR_typ_2 300 324 IPR003591 -
Gso1g0527 1112 SMART LRR_typ_2 348 372 IPR003591 -
Gso1g0527 1112 SMART LRR_typ_2 564 588 IPR003591 -
Gso1g0527 1112 SMART LRR_typ_2 660 685 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0527 Gso-Chr1 8984116 8988535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0527 35 1080 Receptor kinase-like Gene Family AT5G56040 48.308 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso1g0527 PK_Tyr_Ser-Thr 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0527 - - gmx:100792614 2087.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0527 1 8984116 8988535 Gso2g1000 2 11722098 11726548 GST