Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0523 ATGGCGATGATGCAAGGTGTGCAGAAGAACACGCTATACGTGGGAGGCTTAGCGGAAGAAGTGAACGAGTTGATCCTCCACGCGGCGTTCATTCCCTTCGGCGACATCAAGGACGTGAAGACGCCGCTGGACCAGGCCTCGCAGAAGCACCGCTCCTTCGGCTTCGTCACCTTCCTCGAACGGGAAGATGCCTCCGCCGCCATGGACAACATGGACGGCGCCGAGCTCTACGGCCGCGTCCTCACCGTCAACTACGCCCTCCCCGAACGCATCAAGGGAGGGGAGCAGGGCTGGGCCGCCCAGCCCGTTTGGGCGGATGCGGATACCTGGTTTGAGCGGCAGCAGCAGGAGGAAGAGATGAAACGGATTGAGAAGGAGAATCGTGCGGCGATGGAGGCGGCAGAAGACTTGCACCGGAAGCAAGTGGCAGAGCAGCGAGAGGGAGAGAAGGAAGAGGAAATTGAGATCAAGGATGATCCTATGGCCAAGGCTGAAGCGGAGGTTCTTCAAAACCAATGA 519 0.5934 MAMMQGVQKNTLYVGGLAEEVNELILHAAFIPFGDIKDVKTPLDQASQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPVWADADTWFERQQQEEEMKRIEKENRAAMEAAEDLHRKQVAEQREGEKEEEIEIKDDPMAKAEAEVLQNQ* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0523 172 MobiDBLite consensus disorder prediction 139 164 - -
Gso1g0523 172 Coils Coil 113 140 - -
Gso1g0523 172 SMART rrm1_1 11 84 IPR000504 GO:0003723
Gso1g0523 172 MobiDBLite consensus disorder prediction 139 172 - -
Gso1g0523 172 CDD RRM_PPIE 12 84 IPR034168 GO:0003723
Gso1g0523 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Gso1g0523 172 Gene3D - 3 157 IPR012677 -
Gso1g0523 172 PANTHER TRANSFORMER-2-RELATED 5 171 - -
Gso1g0523 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Gso1g0523 172 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 5 171 - -
Gso1g0523 172 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0523 Gso-Chr1 8737571 8738852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0523 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 36.709 1.31e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0523 - - gmx:100787326 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0523 1 8737571 8738852 Gso2g0997 2 11672715 11673892 GST