Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0489 ATGTGCATACACACAACACAGTCCTTGCGGATTTTGAGATTTCATTGTTCTCGTTATTCGTTACTCATGATGATGTCGTATCAATCAATGGAGGAGACGAGGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCTTGTGGGAAGTCTCTGGGTGGCCACATCAGGACTCACATGATGAGTGAGTATCATCATCATTCAGCTTTAGCCAATGAAGAGAGGAACAACAACAACAACAATGCTGCTAATGCTAATGCTATGTTCAAGTTTGATGGTGGGAGAAAGAGGAAGAGGGATTTGGGGTCTGAAGAAAATGGGAACAACAATTATGGTCTCAGGGAGAACCCCAAGAAGACCACGAGGTTTGTGCACTCCAATGCCACTTTGCAACTTGACAAGTTCTGCAAAGAATGTGGGAAGGGTTTTCCATCATTGAAGGCTCTTTGTGGCCACATGGCTTGTCACTCTGAGAAGGACAAGCGAAGGTTTGCTACTGAGAAGCAGAAATTGGTTATGGATAGTCAATCTGACACCGAAACTTCTTCTGCTCCAAGGAGGTCCAAGGGAATGAAGTTCAAGACCCTTAGCAACAACAACCAACCTCAATCTTCTTCTGTGTCAGAGGTTGAGCAGGAGCAAGAAGAGGTGGCTAGGTGCTTGATGATGTTGTCTAAAGATTCTAGCTACAAGGGTCGCTTTGCTTTGCTCACAGAGTCTTCTGACAACAACTCGATTGTCATTACGAAGTCACCTTCTCTTGAAACCAAGGTTACTACTATGATCAATGGTTACGGTAAGAATTCTATGTCTAGTGCTTATGTGGAGAGGAAGCTGGAGCTGGAACAGAACAAGGACTTGAAGTTTAAGTCTGCTGAAGTCGGCTATGATTCTGACAATTCAGATTCTGGGTATTTCAGATATGGTCCTAAGTCGGATGTTTCAAATGATGATGGGTTTTTCAGGAATGAGGTTAAGTCTTCGAAAGTTGGGTACTTGAATGGTTTTGATCAGGAGTATGATGTTGAATCGAGGAAGGTGCTGAGCAGGGGAAGAAGCAGGAGCAGTGAATTTAACGAATTTGTTTTGGAGGATTGGGAGAATTATGATAGAGAGGATGGTGTGGCTGCAAGAACATTTGATTCAAAGAAATTTAAGAAGTCCAACTATGATGATTCTCTTGGTCAAAATTTAGGTGGGGTTTCTACTAGGAAGTATGAGTGCTTGACTAATGAAATGTACAATGGTTGTTCTGATGATTCTGCTTATGAGAGTGATGAGAACAGCACTGACACTGATTCTTATCCTGCTCCAAAGGCTCACAGCAACAGGAACAACCTCAGTGTCCAGAAGGGGAAGAAGAAGAAGAAATTGAAGTCAAAGAAAAGCAAGGCACATGAGTGTCCAATTTGCAACAAGATTTTCAGGTCAGGCCAAGCCTTGGGGGGTCACAAAAGGTCCCATTTTGTTGGAGGTTCTGAGGAAAACACACTTGTGATAAGGCCAAGTGCTCCTCCTGCTGCTGTTCCTTGCCTCATTGATCTCAATCTACCAGCACCGGTTGATGAATAG 1569 0.434 MCIHTTQSLRILRFHCSRYSLLMMMSYQSMEETRKFVCKYCSKRFPCGKSLGGHIRTHMMSEYHHHSALANEERNNNNNNAANANAMFKFDGGRKRKRDLGSEENGNNNYGLRENPKKTTRFVHSNATLQLDKFCKECGKGFPSLKALCGHMACHSEKDKRRFATEKQKLVMDSQSDTETSSAPRRSKGMKFKTLSNNNQPQSSSVSEVEQEQEEVARCLMMLSKDSSYKGRFALLTESSDNNSIVITKSPSLETKVTTMINGYGKNSMSSAYVERKLELEQNKDLKFKSAEVGYDSDNSDSGYFRYGPKSDVSNDDGFFRNEVKSSKVGYLNGFDQEYDVESRKVLSRGRSRSSEFNEFVLEDWENYDREDGVAARTFDSKKFKKSNYDDSLGQNLGGVSTRKYECLTNEMYNGCSDDSAYESDENSTDTDSYPAPKAHSNRNNLSVQKGKKKKKLKSKKSKAHECPICNKIFRSGQALGGHKRSHFVGGSEENTLVIRPSAPPAAVPCLIDLNLPAPVDE* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0489 522 MobiDBLite consensus disorder prediction 169 210 - -
Gso1g0489 522 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Gso1g0489 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Gso1g0489 522 SMART c2h2final6 465 487 IPR013087 -
Gso1g0489 522 SMART c2h2final6 36 58 IPR013087 -
Gso1g0489 522 SMART c2h2final6 133 155 IPR013087 -
Gso1g0489 522 MobiDBLite consensus disorder prediction 104 118 - -
Gso1g0489 522 MobiDBLite consensus disorder prediction 447 462 - -
Gso1g0489 522 ProSitePatterns Zinc finger C2H2 type domain signature. 467 487 IPR013087 -
Gso1g0489 522 Gene3D Classic Zinc Finger 117 191 - -
Gso1g0489 522 Gene3D Classic Zinc Finger 17 95 - -
Gso1g0489 522 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 30 522 - -
Gso1g0489 522 MobiDBLite consensus disorder prediction 419 463 - -
Gso1g0489 522 MobiDBLite consensus disorder prediction 419 446 - -
Gso1g0489 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 465 487 IPR013087 -
Gso1g0489 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Gso1g0489 522 MobiDBLite consensus disorder prediction 76 118 - -
Gso1g0489 522 MobiDBLite consensus disorder prediction 167 211 - -
Gso1g0489 522 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 30 522 - -
Gso1g0489 522 SUPERFAMILY beta-beta-alpha zinc fingers 134 487 IPR036236 -
Gso1g0489 522 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Gso1g0489 522 Pfam C2H2-type zinc finger 135 157 - -
Gso1g0489 522 Pfam C2H2-type zinc finger 36 59 - -
Gso1g0489 522 Pfam C2H2-type zinc finger 464 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0489 Gso-Chr1 7445447 7448140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0489 34 522 C2H2 Transcription Factor Family AT1G26610 41.379 1.99e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso1g0489 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0489 - - gmx:100805520 989.178