Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0488 ATGGAAGACAAAGACAGAGCAGCCTCCTCCGATCCCACCGCAGATGCTGAGTTCGCCGGCGACACGAGTTGGACACTCGCCGCCGATGACTCCGACGGCGCATACCTGTTCCCCGGCGACAGAGAGCGGAGCATACTCAGGGAATTCGTGTGGAACCTCGAACCGGACCAGCCGAACCGGATCGGCACCGACGACGGATTGTGGAAGCCGGTTCAGTCCTCTCTGACCGATTCGATTGAACCGGTCGCCGCCGCGCCGTCGCGGTCGAACAACCAATCGATTTCTTCCAGCTCCAGCGAGGATCCACCGGAGAAATCCACCGTCTCCGACGATAAACCGCCTGAGATACCGAGTAAAGGTAAAAACAAGGGGCAAAAGCGAATACGGCAGCCACGGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGGAGCTACTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAGAGGGTTGAACGCTCTTCCGAGGACCCAACGATTGTGATTACTACATATGAAGGGCAACACTGTCATCACACCGTTGGATTTCCTCGAGGGGGAATCATTAGTCATGAAGCTGCCTTTGCCAGCCAGTTGGCTCCAACAATGTCACAGTTCTATTATCCAATTCAATTACCCAGAGATAATAATAATAATAATAATAGTTTCAGCTCTATTTCTCAGCCATGCCAAGCATATGATGATGCTGAAGGAGGATTAAGTGCTATGATGCCATTGCCAGCTGATGTATCGTCACAGTCACAGCCTTCCACGGATGAAGGGTTGCTTGGAGATATTGTACCCCCGGGAATGCGCATCAGATGA 894 0.5134 MEDKDRAASSDPTADAEFAGDTSWTLAADDSDGAYLFPGDRERSILREFVWNLEPDQPNRIGTDDGLWKPVQSSLTDSIEPVAAAPSRSNNQSISSSSSEDPPEKSTVSDDKPPEIPSKGKNKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGIISHEAAFASQLAPTMSQFYYPIQLPRDNNNNNNSFSSISQPCQAYDDAEGGLSAMMPLPADVSSQSQPSTDEGLLGDIVPPGMRIR* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0488 297 MobiDBLite consensus disorder prediction 69 103 - -
Gso1g0488 297 SUPERFAMILY WRKY DNA-binding domain 136 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g0488 297 MobiDBLite consensus disorder prediction 272 297 - -
Gso1g0488 297 Gene3D WRKY domain 131 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g0488 297 MobiDBLite consensus disorder prediction 1 21 - -
Gso1g0488 297 Pfam WRKY DNA -binding domain 145 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g0488 297 ProSiteProfiles WRKY domain profile. 139 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g0488 297 SMART WRKY_cls 144 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g0488 297 MobiDBLite consensus disorder prediction 104 122 - -
Gso1g0488 297 MobiDBLite consensus disorder prediction 54 132 - -
Gso1g0488 297 PANTHER WRKY TRANSCRIPTION FACTOR 57-RELATED 13 218 - -
Gso1g0488 297 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 13 218 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0488 Gso-Chr1 7430449 7434190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0488 21 295 WRKY Transcription Factor Family AT1G69310 50.327 3.56e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso1g0488 WRKY 1.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0488 - - gmx:100127427 585.104