Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0469 ATGGCTGGCGGCGGAGGTGGGGACCGGCCGCCGTGGAAGGAGGCGGCGCCGCCACGACCCACCATCACTCTGCCGCCGCGGTCTGGTTCCATGGAGACCCTTTTCAATGGAGGGTTCAGCCCTGGTCCCATGACTCTGCTTTCTGGCTTCTTGGGTGATGGGGATGATGGAAAGTCCTTCTCTCAGCTCCTCGCCGGAGCTATGGCTTCTCCGGTGGCCGGAGCTGTCGCCGCCGGAGTGATGGACTCACCTAGTCTCTTTTCACCTTCTCAGGTGTCTTTTGGAATGACACACCAGCAGGCCCTAACACAGGTCTCAGCTCAGGCTTCACAAGCCAACTCAAATATGCATATCCAGGCTGAACATTCATTGACACAGGCTTCTGCAGCTACTTTCAATACAACACAACAGCTGATTCCACCCTTAAATGCAGACTCTTGGGCCACAATGACTGAAACAGCAGATCATTCTCATTCTGAACAAAGATTGCAATCTTCATTGTTGAATGTTGATAAGCCGGCAGATGATGGCTACAACTGGAGGAAGTATGGACAGAAACAGGTGAAGGGTAGTGAGTTTCCTCGAAGTTATTACAAGTGCACGCATCCAAACTGTTCTGTCAAGAAAAAGGTCGAGCGCTCACTTGAGGGTCATGTAACTGCAATTATTTATAAAGGAGAACACAACCATCAACGTCCTCATCCTAACAAGCGCTCAAAAGACACCATGACTTCAAATGCAAATTCAAATATCCAAGGGAGTGTAGATTCAACTTATCAAGGGACAACTACGAACTCGATGTCTAAGATGGATCCAGAGTCAAGTCAGGCAACAGCTGATCATCTATCAGGAACAAGTGAAAGCGAGGAAGTAGGCGATCATGAAACCGAAGTGGATGAGAAAAATGTTGAGCCTGACCCCAAGAGGAGAAAAGCAGAAGTCTCGCAGTCAGATCCAGCTTCTTCACATAGGACTGTCACTGAGCCTCGAATCATTGTGCAAACAACAAGTGAAGTTGATCTCTTGGATGATGGGTATAGATGGCGAAAATATGGGCAGAAAGTTGTCAAAGGCAACCCTTATCCTAGGAGCTATTACAAATGTACAACCCAAGGTTGCAATGTGCGGAAGCACGTGGAGAGGGCTTCAACAGATCCTAAAGCTGTCATAACAACATATGAAGGAAAACACAATCATGATGTGCCAGCAGCTAAGAATAACAGCCACACTATGGCCAGCAATACTGCATCACAGTTAAAATCGCATAATACCAATCCTGAGAAGCATAATTTTGGCAGCAGAGGTATGGGAGGAAATGAACAACAGCCGGTTGCACGGCTTCGGTTGAAGGAAGAGCAGATCACCTAG 1368 0.4795 MAGGGGGDRPPWKEAAPPRPTITLPPRSGSMETLFNGGFSPGPMTLLSGFLGDGDDGKSFSQLLAGAMASPVAGAVAAGVMDSPSLFSPSQVSFGMTHQQALTQVSAQASQANSNMHIQAEHSLTQASAATFNTTQQLIPPLNADSWATMTETADHSHSEQRLQSSLLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCSVKKKVERSLEGHVTAIIYKGEHNHQRPHPNKRSKDTMTSNANSNIQGSVDSTYQGTTTNSMSKMDPESSQATADHLSGTSESEEVGDHETEVDEKNVEPDPKRRKAEVSQSDPASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKNNSHTMASNTASQLKSHNTNPEKHNFGSRGMGGNEQQPVARLRLKEEQIT* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0469 455 MobiDBLite consensus disorder prediction 240 285 - -
Gso1g0469 455 Gene3D WRKY domain 327 403 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g0469 455 Gene3D WRKY domain 161 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g0469 455 MobiDBLite consensus disorder prediction 1 30 - -
Gso1g0469 455 SUPERFAMILY WRKY DNA-binding domain 172 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g0469 455 MobiDBLite consensus disorder prediction 286 317 - -
Gso1g0469 455 Pfam WRKY DNA -binding domain 175 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g0469 455 Pfam WRKY DNA -binding domain 343 399 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g0469 455 MobiDBLite consensus disorder prediction 223 328 - -
Gso1g0469 455 MobiDBLite consensus disorder prediction 404 430 - -
Gso1g0469 455 SMART WRKY_cls 174 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g0469 455 SMART WRKY_cls 342 401 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g0469 455 MobiDBLite consensus disorder prediction 223 239 - -
Gso1g0469 455 ProSiteProfiles WRKY domain profile. 337 402 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g0469 455 ProSiteProfiles WRKY domain profile. 175 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g0469 455 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 14 454 - -
Gso1g0469 455 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 454 IPR044810 GO:0003700
Gso1g0469 455 SUPERFAMILY WRKY DNA-binding domain 334 402 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g0469 455 MobiDBLite consensus disorder prediction 398 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0469 Gso-Chr1 6875477 6880578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0469 19 455 WRKY Transcription Factor Family AT2G03340 51.341 4.24e-144 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso1g0469 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0469 - - gmx:100127369 914.064