LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso1g0459	ATGAGCAGCGGCGGCGGATCGTCAGAGGCGGCGGCGGCGGCGAAGGAGAAGGAGAAGGAGAAGGCGCGTGTGAGTCGAACGTCGCTGATTCTGTGGCACGCGCACCAAGACGACGCCGCAGCGGTGAGGAAGCTTCTGGAGGAGGATCCATCGCTGGTGAAGGCGAGGGATTACGACAGCCGGACGCCGCTACATGTGGCGTCGCTCCATGGATGGGTTGAGGTTGCGAATTGCTTGATCGAATTCGGTGCTGACGTCAACGCTCAGGATCGTTGGAAAAACACTCCTCTGGCTGATGCAGAAGGAGCTAAAAGAACTGCCATGATTGAGCTTTTGAAGTCACATGGTGGCTTGTCGTATGGCCAGAATGGAAGCCATTTTGAACCGAGTCCTGTTCTTCCCCCATTGCCTAACAAATGTGATTGGGAAGTTGACCCTTCTGAGCTGGACTTCTCCAATTCAGTTTGCATTGGAAAGGGATCTTTTGGTGAGATTTTGAAAGCCCATTGGCGTGGAACACCTGTTGCTGTCAAACGTATTCTTCCATCTCTGTCAGATGATAGATTGGTCATTCAGGACTTCAGGCAGGAGGTTAATTTACTTGTGAAGCTTCGACACCCTAATGTTGTTCAATTTCTTGGAGCTGTTACTGACAGAAAGCCTCTTATGTTAATTACTGAGTATCTGAGAGGAGGTGATCTTCATAAGTACCTCAAGGACAAAGGTGCACTTAGTCCTTCAACAGCCATCAATTTTGGCTTGGATATTGCTAGAGGGATGGCTTATCTTCACAATGAACCAAATGTTATCATTCATCGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAACTCCAGTGCTGACCATTTAAAAGTTGGTGATTTTGGACTTAGTAAGCTCATTAAGGTCCAAAGTGCTCATGACGTATACAAGATGACGGGTGAAACTGGAAGCTACCGCTACATGGCTCCTGAAGTTCTCAAACACCGGAGATATGATAAGAAGGTTGATGTGTTCTCCTTTGCAATGATTCTGTATGAGATGCTTGAAGGTGAACCCCCTTTTTCAAATTACGAACCTTATGATGGAGCCAAATATGTGGCAGAAGGACACAGACCTTCTTTTAGGGGAAAGGGTTATATCCCTGAACTGCGAGAGAGCATTGGTGCCGTGAAATTCAGATGA	1185	0.4734	MSSGGGSSEAAAAAKEKEKEKARVSRTSLILWHAHQDDAAAVRKLLEEDPSLVKARDYDSRTPLHVASLHGWVEVANCLIEFGADVNAQDRWKNTPLADAEGAKRTAMIELLKSHGGLSYGQNGSHFEPSPVLPPLPNKCDWEVDPSELDFSNSVCIGKGSFGEILKAHWRGTPVAVKRILPSLSDDRLVIQDFRQEVNLLVKLRHPNVVQFLGAVTDRKPLMLITEYLRGGDLHKYLKDKGALSPSTAINFGLDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLIKVQSAHDVYKMTGETGSYRYMAPEVLKHRRYDKKVDVFSFAMILYEMLEGEPPFSNYEPYDGAKYVAEGHRPSFRGKGYIPELRESIGAVKFR*	395

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso1g0459	394	ProSitePatterns	Protein kinases ATP-binding region signature.	157	178	IPR017441	GO:0005524
	Gso1g0459	394	ProSiteProfiles	Protein kinase domain profile.	151	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso1g0459	394	CDD	STKc_MAP3K-like	157	373	-	-
	Gso1g0459	394	PIRSF	ILK	1	390	-	-
	Gso1g0459	394	Gene3D	Phosphorylase Kinase; domain 1	143	230	-	-
	Gso1g0459	394	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	11	386	-	-
	Gso1g0459	394	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	270	282	IPR008271	GO:0004672\|GO:0006468
	Gso1g0459	394	SMART	ANK_2a	59	88	IPR002110	GO:0005515
	Gso1g0459	394	MobiDBLite	consensus disorder prediction	1	23	-	-
	Gso1g0459	394	SUPERFAMILY	Ankyrin repeat	30	117	IPR036770	-
	Gso1g0459	394	SUPERFAMILY	Protein kinase-like (PK-like)	140	375	IPR011009	-
	Gso1g0459	394	PANTHER	SERINE/THREONINE-PROTEIN KINASE STY8-LIKE	11	386	-	-
	Gso1g0459	394	ProSiteProfiles	Ankyrin repeat region circular profile.	59	91	-	-
	Gso1g0459	394	ProSiteProfiles	Ankyrin repeat profile.	59	91	IPR002110	GO:0005515
	Gso1g0459	394	SMART	serkin_6	151	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso1g0459	394	Pfam	Protein tyrosine and serine/threonine kinase	156	373	IPR001245	GO:0004672\|GO:0006468
	Gso1g0459	394	Pfam	Ankyrin repeats (many copies)	45	97	IPR002110	GO:0005515
	Gso1g0459	394	Gene3D	-	4	126	IPR036770	-
	Gso1g0459	394	Gene3D	Transferase(Phosphotransferase) domain 1	231	389	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso1g0459	Gso-Chr1	6490497	6500887	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso1g0459	2	388	MAP Kinase Kinase Kinase	AT1G14000	82.188	0.0	667

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-5	Gso1g0459		PK_Tyr_Ser-Thr	6.3e-55	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso1g0459	-		-	gmx:100789273	759.985