Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0449 ATGGGAAGGATGCCATGCTGTGAGAAGGGAGGGTTGAAGAAAGGACTATGGACACCCGAAGAAGATAAGAAGCTCGTTGCTTATGTTGAAAAGCATGGCCATGGAAACTGGCGTTCAGTGCCTGACAAAGCAGGTCTTGAAAGATGTGGAAAGAGTTGCAGATTGAGGTGGATTAACTACCTCAAGCCAGATATAAAACGAGGAAACTTCAGCATGGAGGAAGACCACACCATTATTCAACTTCATGCTCTTCTGGGAAACAAATGGTCAATCATAGCAGCTCACTTGCCCAGGAGAACAGATAATGAGATCAAGAACTACTGGAACACCAACGTCAAGAAAAGACTTATCAGAATGGGCTTAGATCCCGTTACTCACAAACCAATAAAACCCAATACGTTTGAACGCTATGGTGGTGGCCATGGCCAGTTCAAGAACACCATCAATACCAACCACGTGGCTCAATGGGAGAGTGCTCGAATGGAAGCCGAAGCAAGAGGATCCGTGTTGCAAGTTGGATCTCACTCCTCACATCAACCTCAGCTAGTCTTAAGCAAAATCCCAACTCAACCTTGTCCTTCATCATCAGATTCAGTATCAACCAAACACAACACAGTGTATAACATGTATGCCCTCGTGCTTGCCACAAATCATGACCCTTTATGGCCAGTATCCCCGTTGAGCATCCCCGGTTGGAAGGTTCCTGCAGTCTCTACCAATGTTGGACAATTCACCAACACGGGAAGCTCACTCTCTTATGAGAGTGATGTTAACGTCACCGAAACTAATAGTCAAATTCAAAAGATACCAGAAAATTACTTGTCAAACTTACAAGATGAAGATATTATGGTGGCTGTGGAAGCCTTTAGAACAATAAGATGTGAGAGTATTCTAGAATTGTTTAGGGGGTCGAATGACATGGAAGGCCTCAATAAACAATCATTCTTTTGA 951 0.4385 MGRMPCCEKGGLKKGLWTPEEDKKLVAYVEKHGHGNWRSVPDKAGLERCGKSCRLRWINYLKPDIKRGNFSMEEDHTIIQLHALLGNKWSIIAAHLPRRTDNEIKNYWNTNVKKRLIRMGLDPVTHKPIKPNTFERYGGGHGQFKNTINTNHVAQWESARMEAEARGSVLQVGSHSSHQPQLVLSKIPTQPCPSSSDSVSTKHNTVYNMYALVLATNHDPLWPVSPLSIPGWKVPAVSTNVGQFTNTGSSLSYESDVNVTETNSQIQKIPENYLSNLQDEDIMVAVEAFRTIRCESILELFRGSNDMEGLNKQSFF* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0449 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gso1g0449 316 CDD SANT 69 112 IPR001005 -
Gso1g0449 316 Gene3D - 14 66 - -
Gso1g0449 316 PANTHER TRANSCRIPTION FACTOR MYB106 1 185 - -
Gso1g0449 316 CDD SANT 17 61 IPR001005 -
Gso1g0449 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso1g0449 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 185 - -
Gso1g0449 316 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gso1g0449 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso1g0449 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso1g0449 316 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso1g0449 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gso1g0449 316 SMART sant 13 63 IPR001005 -
Gso1g0449 316 SMART sant 66 114 IPR001005 -
Gso1g0449 316 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0449 Gso-Chr1 6313277 6314849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0449 1 200 MYB Transcription Factor Family AT3G01140 62.069 9.47e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso1g0449 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0449 K09422 - gmx:100787150 660.218