Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0448 ATGGGAAGGATGCCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGACACCCGAAGAAGATAAGAAGCTTGTTGCTTATGTTGAAAAGCACGACCACGGAAACTGGCATTCAGTGCCTGCCAAAGCGGGTCTTCAAAGATGTGGAAAGAGTTGCAGGCTGAGGTGGATCAATTACCTCAAGCCAGATATAAAAAGAGGAAACTTCAGCATGGAGGAAGACCGTACCATTATTCAACTTCATGCTCTTCTTGGAAACAAATGGTCAATCATAACAGCTCACTTGCCCAATAGAACAGACAATGAGATCAAGAACTACTGGAACACCAATGTCAAGAAAAGATTCATAAGAATGAGCTTAGATCCCATTACTCACAAACCAATGAAATCCAACACGTTTGAGGCCCATGATGAGTTCAAGGACATCACAAATATTGGCCACGTTTCTCAATGGGAGAGTGCTCGACTCGAAGCTGAAGCAAGAGGATCTATGTTGCAAGTGGGGTCTGGATCCTTACATCTCCCTAGGTTAATCTTAAGCAAAATTCCAACTCAACCTTGTCCTTCATCAAATTTGCTATCGACTGAACATAAGCGAGTGTATAACATGTATGCTCTCGTGCTTGCAACGAATCATGACCTTCAATCATCAGTATCTACTTTGAGCGTTCCCAAGCTTCCTGCAGTCTCTACCAATATTGGACAATTCACCGACATGGAAAACTTACTCTCATATAATGGTGATGGTAATGTTGTAGAAATCAGTAGCCATATTCCAAAGGTAATGGAAGGTTGTGCATCAAACTTGCAAGATGACGACATTATCATGGCTGTGGAAGCATTTAGAACGCCAAGAAACACAAGTATTCAAGAATTGTTTGATGAATCCGCTTCCAGATAA 903 0.4208 MGRMPCCEKVGLKKGPWTPEEDKKLVAYVEKHDHGNWHSVPAKAGLQRCGKSCRLRWINYLKPDIKRGNFSMEEDRTIIQLHALLGNKWSIITAHLPNRTDNEIKNYWNTNVKKRFIRMSLDPITHKPMKSNTFEAHDEFKDITNIGHVSQWESARLEAEARGSMLQVGSGSLHLPRLILSKIPTQPCPSSNLLSTEHKRVYNMYALVLATNHDLQSSVSTLSVPKLPAVSTNIGQFTDMENLLSYNGDGNVVEISSHIPKVMEGCASNLQDDDIIMAVEAFRTPRNTSIQELFDESASR* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0448 300 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso1g0448 300 CDD SANT 69 112 IPR001005 -
Gso1g0448 300 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso1g0448 300 CDD SANT 16 61 IPR001005 -
Gso1g0448 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 201 - -
Gso1g0448 300 PANTHER TRANSCRIPTION FACTOR MYB106 1 201 - -
Gso1g0448 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gso1g0448 300 Gene3D - 69 115 - -
Gso1g0448 300 Gene3D - 13 66 - -
Gso1g0448 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gso1g0448 300 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso1g0448 300 SMART sant 66 114 IPR001005 -
Gso1g0448 300 SMART sant 13 63 IPR001005 -
Gso1g0448 300 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gso1g0448 300 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0448 Gso-Chr1 6174351 6175737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0448 1 188 MYB Transcription Factor Family AT3G01140 61.340 4.61e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso1g0448 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0448 K09422 - gmx:100785734 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0448 1 6174351 6175737 Gso2g0926 2 10679499 10683551 GST