Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0436 ATGGCTCAAGTTTGTTTGCTCTTGGTGGGGCTTCTCACAATGTTCTCCTCTGCCTATGGCTATGGATATGGTGGTGGCTGGGTTAATGCACATGCCACCTTCTATGGAGGAAGTGATGCCTCAGGAACAATGGGTGGGGCATGTGGATATGGCAACCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCTTTGAGCACTGCTTTGTTCAACAATGGTCTTAGTTGTGGCTCATGCTATGAAATAAGGTGTGTGAATGACCATAGGTGGTGCCTCCCTGGCTCCATTATGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCCTTACCAAACAATGCAGGAGGATGGTGCAACCCTCCTATGCACCATTTTGACCTCTCTCAGCCTGTCTTCCTTCGCATTGCACAATACAGAGCAGGAATTGTGCCTGTGTCCTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACAATCAATGGCCACTCCTACTTTAACTTGGTCCTCATAACAAACGTAGGAGGTGCTGGAGATGTTCATGGTGTGGCCATCAAAGGGTCAAGAACTGGGTGGATGCCAATGTCCAGAAACTGGGGTCAAAATTGGCAAAGCAACAACTATCTCAATGGCCAAAGCCTCTCATTCAAGGTCACCACTAGTGATGGCCGTACAGTGGTGTCCTACAATGTTGCCCCTGCTGGTTGGTCCTTCGGCCAAACCTACACTGGTGCTCAATTCCGCTAG 753 0.4967 MAQVCLLLVGLLTMFSSAYGYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDHRWCLPGSIMVTATNFCPPNNALPNNAGGWCNPPMHHFDLSQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHGVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSYNVAPAGWSFGQTYTGAQFR* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0436 250 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Gso1g0436 250 Pfam Lytic transglycolase 62 147 IPR009009 -
Gso1g0436 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Gso1g0436 250 PANTHER EXPANSIN-A15 5 249 IPR002963 GO:0009664
Gso1g0436 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Gso1g0436 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Gso1g0436 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gso1g0436 250 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Gso1g0436 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Gso1g0436 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Gso1g0436 250 SUPERFAMILY Barwin-like endoglucanases 26 175 IPR036908 -
Gso1g0436 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Gso1g0436 250 Gene3D - 157 249 IPR036749 -
Gso1g0436 250 Gene3D - 16 153 IPR036908 -
Gso1g0436 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Gso1g0436 250 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Gso1g0436 250 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Gso1g0436 250 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Gso1g0436 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Gso1g0436 250 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Gso1g0436 250 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Gso1g0436 250 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Gso1g0436 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Gso1g0436 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Gso1g0436 250 PANTHER EXPANSIN 5 249 - -
Gso1g0436 250 SMART dpbb_1 62 147 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0436 Gso-Chr1 5948136 5950419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0436 21 250 Expansin Gene Family AT2G03090 86.522 1.80e-151 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0436 - - gmx:100796316 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0436 1 5948136 5950419 Gso2g0916 2 10475760 10478094 GST