Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0428 ATGGCCAGCAGCAAGTGTTGCATGATCTCTCCACAACAAAACCAGAATGCCCCCACATGTTACCCTTCTCCAATAGGAGTAGTCTTTGCAGATATGATGGGGTCTCTCTCTCTTGCCACAGTTTCAAATAATGCTTCTTCATCTCAAGAAAGTAATGTTTATGGTTATGGTTATGGTTATGCCTCTGGGGTGGGAAATGGGAGCACAAGGTGGAGTTTTCCTTTCATGAGGGAGTTTCTTTCTTCAAACTTTGAAGACTGCAGTGATTTAGTAGGGGCTGGGGAGAGTAACAACAGTAATGAGAAAACAAACCATAATAATGGCAAGTTCAGTGAAGAAGAAAGTAACCCTAATGAGAACCATGCCAATGGCAAAGAGGTGGATAGTGGACACTCCAAACTTTGTGCAAGAGGGCACTGGAGGCCTGCTGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTTTATGGCCCTCAGAATTGGAACCTCATAGCTGAAAAACTAGAAGGAAGATCAGGTAAGAGTTGTAGGCTGAGGTGGTTCAACCAGTTGGATCCAAGGATCAACAGAAGAGCATTCAGTGAAGAAGAAGAAGAGAGGCTAATGCAGGCACATAGAATTTACGGCAACAAATGGGCCATGATCGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGGAAGTACAGGGAACAATCCAGTGCTTACAGGAGGAGGAGAATGAGCCAATCTGTGCACAGAAGAGTGGAGCAAAATCCAACCTTTGTTTGCAGCAGCAGCAGAGATAATGCCTCAACCACAGAACAAGAACCAGAACCATCACCTTCCTATTATCCCAATCTCATTCACCATGGAGTAGCACTCACCAATAACATGGCTAGTTTCCCACCCTTCCATGGAGTAGCTGCGTGTAATGGCGTGGTTGTTGAGTTTGGCTCAAATGGTTCTCCACAAAACATGACTAGTGGGAGAGAAGCAATGCCAAACACCACACATGTTGGCTTGTCTGCTCAAGCTCAACAACAAGCACCATTTGATTTCTTCTCTGGTGGTGGAAGCAATGACATAGTGTTAGAGTCCATAAGCCATATGAGAAGCAGGGAAAGAACCAATGGATCTCACAATCATCATTGCCAATTATCTGGTTGCTACCCTCATTATCCCCAACAATATTTGATGGCAATGCAACAACAGCTAGACAACAACAACAATTTTTACAGTTTCTTGAATTCCTCACCAGCAGCATCAACAGCTAGGGAACCATCATCATCACCATGTGTTGCAGAAATCAGAGATAAAGTGGAGAATAGTGACCCCCCAGATGGTGTTCCACCCCCATTTTTTGACTTCCTTGGAGTAGGAGCCACATGA 1398 0.4471 MASSKCCMISPQQNQNAPTCYPSPIGVVFADMMGSLSLATVSNNASSSQESNVYGYGYGYASGVGNGSTRWSFPFMREFLSSNFEDCSDLVGAGESNNSNEKTNHNNGKFSEEESNPNENHANGKEVDSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMSQSVHRRVEQNPTFVCSSSRDNASTTEQEPEPSPSYYPNLIHHGVALTNNMASFPPFHGVAACNGVVVEFGSNGSPQNMTSGREAMPNTTHVGLSAQAQQQAPFDFFSGGGSNDIVLESISHMRSRERTNGSHNHHCQLSGCYPHYPQQYLMAMQQQLDNNNNFYSFLNSSPAASTAREPSSSPCVAEIRDKVENSDPPDGVPPPFFDFLGVGAT* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0428 465 Pfam Myb-like DNA-binding domain 189 232 IPR001005 -
Gso1g0428 465 Pfam Myb-like DNA-binding domain 137 183 IPR001005 -
Gso1g0428 465 Gene3D - 137 188 - -
Gso1g0428 465 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 238 IPR017930 -
Gso1g0428 465 SUPERFAMILY Homeodomain-like 137 230 IPR009057 -
Gso1g0428 465 MobiDBLite consensus disorder prediction 106 131 - -
Gso1g0428 465 MobiDBLite consensus disorder prediction 251 285 - -
Gso1g0428 465 MobiDBLite consensus disorder prediction 92 131 - -
Gso1g0428 465 MobiDBLite consensus disorder prediction 256 283 - -
Gso1g0428 465 Gene3D - 190 262 - -
Gso1g0428 465 ProSiteProfiles Myb-like domain profile. 137 183 IPR001005 -
Gso1g0428 465 SMART sant 136 185 IPR001005 -
Gso1g0428 465 SMART sant 188 236 IPR001005 -
Gso1g0428 465 CDD SANT 140 181 IPR001005 -
Gso1g0428 465 CDD SANT 191 231 IPR001005 -
Gso1g0428 465 ProSiteProfiles Myb-like domain profile. 184 234 IPR001005 -
Gso1g0428 465 PANTHER MYB PROTEIN-RELATED 26 465 - -
Gso1g0428 465 PANTHER MYB TRANSCRIPTION FACTOR 26 465 - -
Gso1g0428 465 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 183 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0428 Gso-Chr1 5875152 5877612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0428 112 262 MYB Transcription Factor Family AT1G69560 71.875 7.22e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso1g0428 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0428 K09422 - gmx:100776292 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0428 1 5875152 5877612 Gso2g0914 2 10435688 10438133 GST