Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0423 ATGGATCCACAAAGCATGCATTTTGTGCTGTCCACTGATTCCAAACCAAGGCTGAAATGGACTCCTGAGCTTCACCGACGGTTCATTGAGGCTACCAATCAGCTTGGAGGTGCAGATACAACTCCAAAGAGTCTTATGAGGGTGATGGGAATTCCGGGACTTACTTTGTACCACCTGAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAAGAACTAGAAACCTGCTCTGACAACAAACAAGAAGATTACATAGAAACCAAGAGCAGCAGTGATGGCCATTGCAGCAGGGAAATCAGTATTGGGGCCCAGAATCAACTTACGGAAAACATGCAGATAGCTCAGGCACTCCAAATGCAAATGGAAGTGCAAAGGAAACTTCATGAACAAATTGAGGTGCAAAAACATTTGCAGCTCAGAATTGAAGCTCAAGGGAAGTATTTACAATCAGTGCTAAAGAAGGCACAAGAAGCACTTGCTGGATACAATTCTTCCCCAGTGGGGATAGAACTTACAAAAGCTGAACTTTCTCAGCTAGTTACCATCATCAACAATGCTTGTCCAAGTTCTCCCATCTCAGAACTGACAGAAACAAGAGGGTTGAGTTTAAGCTGTGGGGAGAGGAAAAGAGACAGAGGCACTATGTGTTCACTGGAAAGTTCCTTGACATCTTCTGAAAGCTCGGGGAGAAAGGAAGAGAAACAGCCAATGGAAGAGATTGTGGAGTTCAAAAGTTCCATTAATGTTTCACTTCAATTGCCATTGATGGAAATTCTCACTGAGGATAAAGCATCCAATGGAGGCTCAAGCAATGAGGCTAGTGGGAGAAAGAGAAGTGCAACAGCAGCAGAATCTGATGATGGTAGCTGTGTTGTTGAGCAACCATGTGGGAAAAGATGTGGCAACAAGTTGAGGAAAGCCAAGTTGTCAGAAATGCTTGACTTGAACAGCCAGTGTCAGAGTGACATGGACTCAACAAGCTCAAAAACATTAGACCTAAATTGCAGTTTAAACTTTTGGGAACCATGA 1032 0.4341 MDPQSMHFVLSTDSKPRLKWTPELHRRFIEATNQLGGADTTPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQELETCSDNKQEDYIETKSSSDGHCSREISIGAQNQLTENMQIAQALQMQMEVQRKLHEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALAGYNSSPVGIELTKAELSQLVTIINNACPSSPISELTETRGLSLSCGERKRDRGTMCSLESSLTSSESSGRKEEKQPMEEIVEFKSSINVSLQLPLMEILTEDKASNGGSSNEASGRKRSATAAESDDGSCVVEQPCGKRCGNKLRKAKLSEMLDLNSQCQSDMDSTSSKTLDLNCSLNFWEP* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0423 343 Pfam Myb-like DNA-binding domain 17 67 IPR001005 -
Gso1g0423 343 Pfam MYB-CC type transfactor, LHEQLE motif 112 158 IPR025756 -
Gso1g0423 343 Gene3D - 14 71 - -
Gso1g0423 343 MobiDBLite consensus disorder prediction 263 285 - -
Gso1g0423 343 MobiDBLite consensus disorder prediction 215 238 - -
Gso1g0423 343 SUPERFAMILY Homeodomain-like 14 69 IPR009057 -
Gso1g0423 343 MobiDBLite consensus disorder prediction 264 279 - -
Gso1g0423 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 71 IPR017930 -
Gso1g0423 343 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 15 69 IPR006447 GO:0003677
Gso1g0423 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 340 IPR044848 GO:0003700
Gso1g0423 343 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0423 Gso-Chr1 5773261 5775681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0423 6 300 G2-like Transcription Factor Family AT1G69580 50.162 3.73e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso1g0423 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0423 - - gmx:100784670 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0423 1 5773261 5775681 Gso2g0910 2 10376405 10378657 GST