Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0420 ATGGCTTCAGAGACAGAGGTGTTAAATATTATTTCCTCTGTTTTCGAACGCTTCGAGAGAAACATGTCTCTGTTTCTGCCCTTCATCTTCGGCTTCTCTGACGCCACCTCAGGACGAGATAGCGACGACCCAGATCACGAAACTGCTCACACAGAAGGTTCACTGCGTCAAAGAATAATCTTGGTGAACCCCTTGACTCAGGGCATGGTGGTGATCGACGGCGGTTTGAGCCTCGAAGCTCTGTTTCGCGAACTCGCCAACGGGAAAGGTGGTCGACCACCGGCTTCTAAGGAGTCCATTGAGGCCTTGCCAAGTGTGGAAATTGGAGAAGATAATGAGGATTTGGAGTGTGTAGTTTGTTTGGAGGAGTTTGGGGTTGGTGGGGTGGCAAAGGAGATGCCTTGTAAGCATAGGTTTCATGTCAATTGCATTGAGAAGTGGTTGGGGATGCATGGGTCTTGTCCTGTGTGTAGGTATGAGATGCCTGTGAAGGAGATTGATTGGGGGAAGAAGAGGGAAGAGGAAGTGGGAGAGAGAAGTGGTGGTGGTGGTGAAGTTTGGGTTAGTTTTCCTTTTAATAGGAGTAGTAGGAGAGGCCAAGATCTTGATCAAGCTCAAGCTGTTGCTGGTGATTCAAATGATGATGATTCTTCATCAACTCATGGAGGTGCTGCTGAGGAGAGTTAG 687 0.4847 MASETEVLNIISSVFERFERNMSLFLPFIFGFSDATSGRDSDDPDHETAHTEGSLRQRIILVNPLTQGMVVIDGGLSLEALFRELANGKGGRPPASKESIEALPSVEIGEDNEDLECVVCLEEFGVGGVAKEMPCKHRFHVNCIEKWLGMHGSCPVCRYEMPVKEIDWGKKREEEVGERSGGGGEVWVSFPFNRSSRRGQDLDQAQAVAGDSNDDDSSSTHGGAAEES* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0420 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 164 IPR013083 -
Gso1g0420 228 CDD RING-H2_PA-TM-RING 116 158 - -
Gso1g0420 228 SMART ring_2 117 157 IPR001841 -
Gso1g0420 228 MobiDBLite consensus disorder prediction 195 228 - -
Gso1g0420 228 MobiDBLite consensus disorder prediction 195 219 - -
Gso1g0420 228 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 11 195 - -
Gso1g0420 228 SUPERFAMILY RING/U-box 111 164 - -
Gso1g0420 228 Pfam Ring finger domain 116 158 IPR001841 -
Gso1g0420 228 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Gso1g0420 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 11 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0420 Gso-Chr1 5736416 5737514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0420 4 197 C3H Transcription Factor Family AT1G26800 52.792 1.08e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0420 - - gmx:100819587 448.358