Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0413 ATGGACCTAACCAAGGACACCAACACCCTTGACACAAATTCTCAAACCCCACCACAACCCTTCACCACCAACGGCTCCCTCAAGCACCATCACCATCACCACCCCACCACCGTGTCACCGCCGCAACAGCCACCGTCTACGGCGGTTGCCTACAAAGAGTGCCTCAAAAACCATGCAGCCAGCATTGGTGGCCACGCGCTTGATGGGTGCGGTGAGTTCATGCCCTCCTCTTTCTCCAACCCCAACGAACCGCGCTCGCTAACGTGCGCCGCGTGTGGATGCCACCGTAACTTCCACCGTCGCCGCGACACACCGGAAAATCATCACCGCTCCAACTCCAGGCCCAATTTCTTAAGCTTCTACCACTCCCCGCCACCGTCTCGTCACGGGGCGGGCCCGAGCTCCAGCCCAAGCCCAAGCCCGATGTCGAGCCCGAGCCCACCGCCAATCTCTCATCATTTCCCACCTTCCTCCCACCATTTCCAAGGCCCAATACCAGCCCACGGGCTCTTGGGCCTTGGAAATGAACATCATCATCACATGAGTTTTAATTTTAACTCTTCTTCCCACTGGAATCCAGAAAACTCGGGTGGGAAGAAGAGGCATAGGACCAAGTTCAGCCATGAACAGAAAGAAAAAATGCACAATTTCGCCGAGAAATTGGGTTGGAGAATGCAGAAAGGGGATGAAGGATTGGTGCAAGATTTCTGCAAGGAGATTGGCGTTTCAAGAGGGGTCTTCAAGGTGTGGATGCACAACAACAAGAACACTTCTGGCAGGAAGAAATCGTTGGAACCAGGTGAAAGAATCAATGGCACCGGTAGTGATAGTACAGATAATAATAATAATCATCCTTACAACACAAACAGCACCAACGATGACACCCACTGA 891 0.5297 MDLTKDTNTLDTNSQTPPQPFTTNGSLKHHHHHHPTTVSPPQQPPSTAVAYKECLKNHAASIGGHALDGCGEFMPSSFSNPNEPRSLTCAACGCHRNFHRRRDTPENHHRSNSRPNFLSFYHSPPPSRHGAGPSSSPSPSPMSSPSPPPISHHFPPSSHHFQGPIPAHGLLGLGNEHHHHMSFNFNSSSHWNPENSGGKKRHRTKFSHEQKEKMHNFAEKLGWRMQKGDEGLVQDFCKEIGVSRGVFKVWMHNNKNTSGRKKSLEPGERINGTGSDSTDNNNNHPYNTNSTNDDTH* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0413 296 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 33 262 - -
Gso1g0413 296 MobiDBLite consensus disorder prediction 1 25 - -
Gso1g0413 296 SUPERFAMILY Homeodomain-like 186 260 IPR009057 -
Gso1g0413 296 Gene3D - 185 260 - -
Gso1g0413 296 MobiDBLite consensus disorder prediction 99 208 - -
Gso1g0413 296 MobiDBLite consensus disorder prediction 270 296 - -
Gso1g0413 296 MobiDBLite consensus disorder prediction 180 194 - -
Gso1g0413 296 MobiDBLite consensus disorder prediction 255 296 - -
Gso1g0413 296 Pfam ZF-HD protein dimerisation region 49 102 IPR006456 -
Gso1g0413 296 MobiDBLite consensus disorder prediction 1 46 - -
Gso1g0413 296 MobiDBLite consensus disorder prediction 138 154 - -
Gso1g0413 296 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 262 - -
Gso1g0413 296 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 51 102 IPR006456 -
Gso1g0413 296 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 199 256 IPR006455 -
Gso1g0413 296 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 51 101 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0413 Gso-Chr1 5639211 5640697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0413 1 260 ZF-HD Transcription Factor Family AT5G15210 42.125 7.35e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso1g0413 ZF-HD_dimer 9.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0413 - - gmx:100817446 508.834